Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00017 ATGAAGATGGCGGCTTTTGGGTCGAAAGGGGTTGGGTTCTTGCTCTCAAATCTAAGCCAGACTCTTCGAGAAACTGCGTACTTCAAACTAACACTCACCGTTGGATTTTCTACCTATCGGACGCTTGAGAAATCGGAATTCGCCTCCTTCGTCCGAACCATTACAACTGTTACTTCCGAATTTGTATCTATCCATTTACCACGGCCATACTCGTATTCGAGTGTGCATGCTCCTGATGCCATTTACCTGAAGAATCGAGAAATCGATAGACTCATTAAATTTGGCCATCTTAGTGCTGCCATTAAATTGTTCGATGAAATGCCTCTTCATGACGTTGTTACGTACAATTTGCTCATTTCTGGGTGTTTTCGCCATGGGCATCCAGAGCGCGCATTTGGTCTCTACAGCCAAATGGTTTTACGAGGAATTAGAGAAAGTGCGTCAACATTTACTTCTGTTTTGGGTACTTGTAGCAACGCGGATTTTTCCAAAGAGGGAAGTCAAATTCACTGCAGGGTTGTTTTTCTTGGATTTAGTTTGAATTTGTTCATTGGTACCTCTCTAATCGATTATTATATGAGAATGGGTCTTGATATTGTCGCTTTGAAGCTGTTTGATGAGTTGCCGCAACGAAATATAGCTGTTTGGAACTTGTTGCTTCGTCGGTTTTGTGAACTGGGTCAATTCGAAAAGCTTCTGGGGTCTTTCTCGAAAATGCAATTGGAAGGCGTAGAGCCAAATGGTCTAACTCTTTGCTATTTGCTTCGAGGTGTTGGTAACGAAAGGCTCTTAGACGAAGGGAGGCAACTACATTCCCGAGCTGTTAAGATCGGACTGGTTGAATCAAATATCTTTGTTCCAAATGCTTTGGTGGATTTCTACTCTGATTGCAGAAGTTTAACAGAAGCAAAAAAAGCATTTGAATGTATTCCATTAGAAGACGTTATTTCCTGGAATTCGATTGTTGCAGTTTATGCAGACATCGGTTTCTTGTCAGAATCACTTGAGTTGTTTTCTCGGATGCAGTTTTGGGGAAAAAGGCCCTCAATTCGGTCGTTAATGGCTTTTTTGAATTTATCTAGTCGGACAAGGAATATCCAGTTGGGGAAACAGATTCAATCTTGTGCGCTGAAGCTGGGTTTTGGCCATGAGAGTAGTCACCTTCAATCGGCTTTGATAAATATGTACGGAAAATGCTTTGATATTGAGAGTTCAGTGGCCGTGTATGAAAGTATTTCTGTGAGAACTTTGGAGTGTTGTAACTCTTTAATGACATCTTTGTTACACTGTGGTGTCATTGAAGATGTGATAGAGATGTTTGGATTGATGGCTGACGAGGGAATTGGGCTTGATGAGGTTACTTTATCCACAACGTTAAAAGCACTATCAATGTCTTCTCCAACAGACTTGACCGGATGCAGATTGCTCCACTGTTGTGCCATAAAATCAGGTCTTGGATTTAATTCCGTGGTTTCATGTTCTTTAATGGACTCTTATTCAAGATGTGGTCATGTTGAGCTCTCTTGCAAAGTTTTTGAGGAAATCCATTCCCCTGGTGTTATTTGTTTCACCTCAATCATCAATGGATATGCCCGAAATGGAATGGGGAAGGAGGGCATCCAAATGCTTAAGACGATGATCCAGAAAGGCTGGAAACCTGACAAAGTGACTTTCTTATGTGCATTGATAGGGTGCAACCATTCAGGGCTGGTCGAAGAAGGAAGATTTGTGTTTGAGTTGATGAAAACGGTTTGCGGAATTGAACCAGACTGGAAACATTATTCATGTATGGTTGATCTTCTTGGTCGTGTAGGTCTACTTGATGAGGCAGAAAAGTTGCTGCTAAAGGTGCCCGAGAAGGTCAACGGTGTAAGCTGGAGCTCCATGTTAAGAAGTTGTAGAATTCATAGAAATGAAATAATCGGAAGGAAAATTGCTAAGTCGTTGGTGGATCTTGAAGCTGAAGATCCTGCCGCTCTTTTGCAGGCTTCAAACTTCTATTCTGATATTGGAGATTTTGAAACTTCAAAGCAACTTAGGGAAGTTGCATTGACAAAAAAAGTGATAAGAGAAATTGGTCGCAGTTTAATAGAGGTGAAAAGTACGATCTTTACTTACTACGAAGCTGATTCCAAGCCATTTTATTGGCCTTATTCCTTGAAACGGGGTTTCCTGGTGTTGCTCGACACTGAGGAAAAAAGGTTCGTGTCTGGGAGTGGTACATGTTATATCTTCTTCATTGTCTTCATGAACTGGTCCCTCGGCTGTGACTTGATGTTTGGTTAA 2286 41.47 MKMAAFGSKGVGFLLSNLSQTLRETAYFKLTLTVGFSTYRTLEKSEFASFVRTITTVTSEFVSIHLPRPYSYSSVHAPDAIYLKNREIDRLIKFGHLSAAIKLFDEMPLHDVVTYNLLISGCFRHGHPERAFGLYSQMVLRGIRESASTFTSVLGTCSNADFSKEGSQIHCRVVFLGFSLNLFIGTSLIDYYMRMGLDIVALKLFDELPQRNIAVWNLLLRRFCELGQFEKLLGSFSKMQLEGVEPNGLTLCYLLRGVGNERLLDEGRQLHSRAVKIGLVESNIFVPNALVDFYSDCRSLTEAKKAFECIPLEDVISWNSIVAVYADIGFLSESLELFSRMQFWGKRPSIRSLMAFLNLSSRTRNIQLGKQIQSCALKLGFGHESSHLQSALINMYGKCFDIESSVAVYESISVRTLECCNSLMTSLLHCGVIEDVIEMFGLMADEGIGLDEVTLSTTLKALSMSSPTDLTGCRLLHCCAIKSGLGFNSVVSCSLMDSYSRCGHVELSCKVFEEIHSPGVICFTSIINGYARNGMGKEGIQMLKTMIQKGWKPDKVTFLCALIGCNHSGLVEEGRFVFELMKTVCGIEPDWKHYSCMVDLLGRVGLLDEAEKLLLKVPEKVNGVSWSSMLRSCRIHRNEIIGRKIAKSLVDLEAEDPAALLQASNFYSDIGDFETSKQLREVALTKKVIREIGRSLIEVKSTIFTYYEADSKPFYWPYSLKRGFLVLLDTEEKRFVSGSGTCYIFFIVFMNWSLGCDLMFG 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 86362 89423 - CmaCh05G000170.1 Cma05g00017 294135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00017 761 Gene3D Tetratricopeptide repeat domain 67 172 IPR011990 GO:0005515
Cma05g00017 761 Gene3D Tetratricopeptide repeat domain 263 373 IPR011990 GO:0005515
Cma05g00017 761 Gene3D Tetratricopeptide repeat domain 175 262 IPR011990 GO:0005515
Cma05g00017 761 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Cma05g00017 761 TIGRFAM PPR: pentatricopeptide repeat domain 215 247 IPR002885 -
Cma05g00017 761 TIGRFAM PPR: pentatricopeptide repeat domain 113 143 IPR002885 -
Cma05g00017 761 TIGRFAM PPR: pentatricopeptide repeat domain 419 451 IPR002885 -
Cma05g00017 761 Gene3D Tetratricopeptide repeat domain 383 468 IPR011990 GO:0005515
Cma05g00017 761 Pfam PPR repeat family 111 157 IPR002885 -
Cma05g00017 761 Pfam PPR repeat family 518 564 IPR002885 -
Cma05g00017 761 Pfam PPR repeat family 212 258 IPR002885 -
Cma05g00017 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Cma05g00017 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Cma05g00017 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cma05g00017 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Cma05g00017 761 Gene3D Tetratricopeptide repeat domain 469 663 IPR011990 GO:0005515
Cma05g00017 761 PANTHER - 250 465 - -
Cma05g00017 761 PANTHER - 354 699 - -
Cma05g00017 761 PANTHER - 164 349 - -
Cma05g00017 761 PANTHER - 80 276 - -
Cma05g00017 761 Pfam PPR repeat 419 448 IPR002885 -
Cma05g00017 761 Pfam PPR repeat 493 517 IPR002885 -
Cma05g00017 761 Pfam PPR repeat 593 617 IPR002885 -
Cma05g00017 761 Pfam PPR repeat 316 342 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00017 - - - mcha:111004572 1126.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01740 Cma05g00017 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00017 Cma-Chr5:86362 Cma18g01233 Cma-Chr18:9689109 2.15E-10 dispersed
Cma05g00017 Cma-Chr5:86362 Cma15g00152 Cma-Chr15:710564 1.27E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g675 . . . Bda11g01271 Bpe13g01468 . . . . . . . . Car18g00722 . Cpe09g00509 Cpe01g01538 Bhi07g01742 . . Lac13g0191 Hepe10g1630 . . Cla05g02550 . . Cco05g2810 . . . . . Cone8ag0673 . . Csa05g02328 Chy10g00895 Cme10g00532 . . . Bda11g01271 . . Bma01g00045 . . . . Cma04g01740 Cma05g00017 Car04g01773 Car05g00015 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012765 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 0 0 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00017 Cma_Chr05 FPKM 0.617753 0.549976 0.647885 0.750903 2.314981 1.864216 2.538299 2.250968 2.52472 2.380725