Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00019 ATGCCTCGCTATACAAACGAGCCCCCTGCGGTTCGCGTCTATACGATTTGCGATGAGTCAAGGTATTTGATTGTGAGAAACGTTCCGGCATTGGGTTGCGGAGATGAGCTGCTCAAACTGTTCTCCTCCTATGGAAACCTTGAAGAGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCAGCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCCTATGCTCCTGACTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGGCGAGAAGTTTTAGCACGATTGGATTCTGGAAGACCAAGAGGATCTGCCGTTAATTCAGCAACCACGAAGTTTACAAATCCTTCTCATTCTCATTACACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCAGTTCCAATCCACATGTGTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCATGCAGCGAACATCTGGAAGCTGGACCTGTGAGCAAGAGATCACGTGTGGATAATAGGAGAAGAATCTAA 681 42.58 MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLARLDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 91837 96347 + CmaCh05G000190.1 Cma05g00019 294137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00019 226 MobiDBLite consensus disorder prediction 124 146 - -
Cma05g00019 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Cma05g00019 226 CDD RRM_RBM48 11 110 IPR034264 -
Cma05g00019 226 SUPERFAMILY RNA-binding domain, RBD 7 99 IPR035979 GO:0003676
Cma05g00019 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Cma05g00019 226 Gene3D - 17 115 IPR012677 -
Cma05g00019 226 MobiDBLite consensus disorder prediction 128 146 - -
Cma05g00019 226 PANTHER UNCHARACTERIZED 3 226 IPR039599 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00019 K24824 RBM48; RNA-binding protein 48 - csv:101209620 392.119
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g673 . . . Bda11g01273 Bpe13g01470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01273 . . . Bma06g00615 . . . . Cma05g00019 . Car05g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006327 1 3 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 0 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00019 Cma_Chr05 FPKM 5.461 7.569888 15.754264 13.296021 9.177324 9.550453 8.8866 9.157131 9.180458 11.059214