Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00020 ATGTTGGGTGGCAACAATGGCAATGGCTTGCTTCCCGTTTTCCAGGATGAAAATCGAAATCAATATCAAACTAATGCTTCTGGCCAGCTGCAGTTGTTTGGGAGTGTGCCTGTTAGCTGTGGAATTGAGCCTGTTAATTATTTTGGAAGTGAGCAATTGGCTCATATGCTTCGCCCTAACAAAAGAAGTAGGGAGATAGAGGATTTCTCATGGCAGCAGAAGCTTCAGATTTCCTTAAATTATAATGCCTGTCAAGATGATGCTGATCGTTCAGCAAGCATTAGAAACCCAAATGCTGTATCAACAGGCTTGAGGCTATCGTATGATGATGATGAACACAACTCCTCAGTTACCACTGCAAGTGGAAGTATGGCAGCTGCACCTTCCATCATCTTTTCGCTTGGTGATAATATCAGGACTGAGATTGATAGACAGAAGGAAGAATTCGATCAATATATTAAAATTCAGGAGGAACATTTGGCAAAGGGTATTAGGGACATGAAGCAAAGACATATGGCTTCCTTTCTTAGTGCGATTGAGAAAGGAATTGGAAAGAAACTACATGAGAAGGATGTAGAAATTGAGAGCATGAACCGTAAAAATAGAGAACTGGTGGAGAGAATAAAGCAGGTTGCCACTGAAGCCCAAAATTGGCATTGCAGAGCAAAGTACAATGAATCAGTAGTGAATGTCCTGAAAAACAATCTTCAGCATGCTATCTCGCAGGGTGCCGACCAAGCGAAGGAAGGGTTTGGAGATAGTGAAGTGGATGATGCTGCCTCACACATTGATCCAAACAATTACCTTAATGTTCATGGTGGGACTATGAAATCTTCAACCAGCAATTTACCAGGTTTCAAGGAGCACATGATTTGCAAAGCATGCAAGGCTAAAGAGGTTTCCATCCTACTTATGCCTTGCAGACATTTATGTTTGTGTAGAGATTGCGATGGACTTGTAAATGTCTGTCCTGTCTGTCAGTTGATCAAAACGGCAGGTATCCAAGTGTACTTGTCCTAA 1020 41.86 MLGGNNGNGLLPVFQDENRNQYQTNASGQLQLFGSVPVSCGIEPVNYFGSEQLAHMLRPNKRSREIEDFSWQQKLQISLNYNACQDDADRSASIRNPNAVSTGLRLSYDDDEHNSSVTTASGSMAAAPSIIFSLGDNIRTEIDRQKEEFDQYIKIQEEHLAKGIRDMKQRHMASFLSAIEKGIGKKLHEKDVEIESMNRKNRELVERIKQVATEAQNWHCRAKYNESVVNVLKNNLQHAISQGADQAKEGFGDSEVDDAASHIDPNNYLNVHGGTMKSSTSNLPGFKEHMICKACKAKEVSILLMPCRHLCLCRDCDGLVNVCPVCQLIKTAGIQVYLS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 96312 99604 - CmaCh05G000200.1 Cma05g00020 294138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00020 339 Coils Coil 187 214 - -
Cma05g00020 339 PIRSF SBP1_RNase_bind 1 339 IPR017066 -
Cma05g00020 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Cma05g00020 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 327 - -
Cma05g00020 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Cma05g00020 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 338 IPR017066 -
Cma05g00020 339 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00020 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101209865 602.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01830 Cma-Chr1:12111405 Cma05g00020 Cma-Chr5:96312 1.22E-50 dispersed
Cma02g01583 Cma-Chr2:8988664 Cma05g00020 Cma-Chr5:96312 1.15E-42 dispersed
Cma05g00020 Cma-Chr5:96312 Cma09g00242 Cma-Chr9:1028813 1.18E-52 dispersed
Cma12g00018 Cma-Chr12:74795 Cma05g00020 Cma-Chr5:96312 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00020 Cma_Chr05 FPKM 17.627542 15.888689 9.928678 10.718326 13.344257 12.620011 15.880277 9.47375 10.113465 9.35711