Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00021 ATGATCATCCCAGTGCGTTGCTTCACCTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTCGATCTTCTGCAGGCGGACTATTCAGAAGGGGATGCGCTTGATGCCCTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAATATTAGGCGGGGGACAAGTTTGCTGCTTATTCAGTCCAGCAGTGATTCATGTTTTTACCGTGTTCGCGTCCAGGCAGGGTCGTTGCTCCTCAGAATAGAATTTTGTGATAGCATGAATAGAAGAGAAGTACTGTGGAATGAATATAGTGGCTTTGAAGGGACTATATTCTTTCACAACACAAGGAAGTTGAGGATTGGAAACATGAACTTGAAGGATTGTCACAGCGCAAATCACTCCCATCCCATTTCTCCGCGTAGATTTAAAGGTATTATGTACCCTTACAGCCACCAGTTTCTTCCCTGTTTTCATTGCCACCCCCAGGCCTATATCCGGATGGTCCAACACCTGATAGAGAGATGCTTGCTGCTTCATATGAGTCGAGATGAGTGCGTGAAGGCATTGGCGCACCATGCAAACATTCGCCCTCTCATAACACATACAGTGTGGAAAGAGCTTCAGAAAGAGAACCCCGAATTCTTCCGGGCATATTTCCGCACTATTTCTCGCCATCCATTCCTCACCAAATTCACGAGGAGGAGTGTGTCCAGAATCATGAGAAGGCAATATCAGTGGAGATTAGGTAGTAGGTCTGGAGAGTGTGATGGTTGTTATCACAAAGGCGTGCATATGGTCCAAGGCATTGTTGCAGAAGCAAGGAGAGAGGTGGAGCATTTTATGTGGACTGCCTCCGCCTAA 885 46.55 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNIRRGTSLLLIQSSSDSCFYRVRVQAGSLLLRIEFCDSMNRREVLWNEYSGFEGTIFFHNTRKLRIGNMNLKDCHSANHSHPISPRRFKGIMYPYSHQFLPCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVWKELQKENPEFFRAYFRTISRHPFLTKFTRRSVSRIMRRQYQWRLGSRSGECDGCYHKGVHMVQGIVAEARREVEHFMWTASA 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 101137 104466 + CmaCh05G000210.1 Cma05g00021 294139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00021 294 TIGRFAM A_thal_3526: uncharacterized plant-specific domain TIGR01589 173 226 IPR006476 -
Cma05g00021 294 SUPERFAMILY RNA polymerase subunit RPB10 1 63 IPR023580 -
Cma05g00021 294 ProSitePatterns RNA polymerases N / 8 Kd subunits signature. 2 11 IPR020789 GO:0003677|GO:0003899|GO:0006351|GO:0008270
Cma05g00021 294 PANTHER - 1 64 - -
Cma05g00021 294 Gene3D - 1 66 - -
Cma05g00021 294 Pfam RNA polymerases N / 8 kDa subunit 2 59 IPR000268 GO:0003677|GO:0003899|GO:0006351
Cma05g00021 294 Hamap DNA-directed RNA polymerase subunit Rpo10 [rpo10]. 2 56 IPR000268 GO:0003677|GO:0003899|GO:0006351
Cma05g00021 294 Pfam Plant protein 1589 of unknown function (A_thal_3526) 176 226 IPR006476 -
Cma05g00021 294 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER 1 64 IPR000268 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00021 K03007 RPABC5, RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 - cmax:111492501 187.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00235 Cma-Chr4:1153318 Cma05g00021 Cma-Chr5:101137 7.33E-26 dispersed
Cma05g00021 Cma-Chr5:101137 Cma07g00961 Cma-Chr7:4647640 1.61E-18 dispersed
Cma17g00548 Cma-Chr17:4385975 Cma05g00021 Cma-Chr5:101137 3.13E-13 dispersed
Cma12g00020 Cma-Chr12:81012 Cma05g00021 Cma-Chr5:101137 1.69E-45 transposed
Cma12g00019 Cma-Chr12:78140 Cma05g00021 Cma-Chr5:101137 1.76E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g670 . . Bda01g02216 . Bpe13g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00021 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013217 1 2 0 1 1 1 1 0 0 1 1 2 2 1 1 1 1 0 2 1 1 0 0 0 1 0 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00021 Cma_Chr05 FPKM 21.145895 19.68194 38.76757 39.621136 53.324146 56.33313 51.868847 66.742859 72.128578 70.319946