Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00022 ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA 576 50.52 MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGEGDHVGRKRNVM 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 105423 106388 - CmaCh05G000220.1 Cma05g00022 294140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00022 191 Gene3D High mobility group box domain 125 179 IPR036910 -
Cma05g00022 191 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
Cma05g00022 191 PANTHER AXIAL REGULATOR YABBY 4 1 181 - -
Cma05g00022 191 CDD HMG-box 135 176 - -
Cma05g00022 191 SUPERFAMILY HMG-box 124 176 IPR036910 -
Cma05g00022 191 Pfam YABBY protein 12 177 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00022 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101211011 316.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01741 Cma05g00022 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00022 Cma-Chr5:105423 Cma11g00536 Cma-Chr11:2583470 3.06E-39 dispersed
Cma04g01741 Cma-Chr4:8746724 Cma05g00022 Cma-Chr5:105423 1.49E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014330 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35005 PF04690 YABBY 1.00E-54 CL0114 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00022 Cma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0