Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00024 ATGACTACTGATACTAATACTAATACTTTAAGTTATTGGTTGAACTGGAGGTTCTTTTTATGTGCTGTCTTTCTATCAACCGCTATGGTAGTGGCATCCTTATTAATATGGAAATATGAAGGCTTCAAAAGACCCAAATCTGGGTCGAGAGATGATTCACAAGATTCAGCAGGGTCATTGTATGAAGATGAACTCTGGCGGCCGTGTCTGAAAGGAATTCATCCAGCTTGGCTGCTAGCTTACAGAATGCTTGCTTTTGCTGTGCTTTTCGGATTGATATTAGGTGACGCTGTTGTTGTTGGAGGCAGGATATTCTTATTTTATACTCAGTGGACGTTCACATTGGTCACGCTCTACTTTGGGGTATGCTTTATAACTTTGAAAGCTACATTTCTGCTGGAAAATCCTGTTATACTTCCCTCACATTTAGTAGACACAAAGCAGGATGGTGCATACCTTGCAACTTCATTCTCCATTTATGGTTGTTATAATAGTGGCAGCTCAGCCGAGCGTACAAGTTTAGATGCAGAGCGAGGCACTTATGTGCCGCCGACTCTTGGTGGGGAGAATCCTGATATGGCCAATACAGCCAAGAGTTTGAACTCCCCTGAAGATCTTCATGAACGCAAAGCTGCTGGTGTGGGTGGATATGCATTTCAAATTATTTTTCAGACATCTGCAGGTGCTGTAGTACTCACAGACATAGTATTTTGGTTCATTCTTTATCCATATCTTCTATCTCGAGGACGTGGGCTAAGTTTTTTCGTTGTTACCATGCACTCGGTAAATGCTGTTTGTCTTCTTGGCGAAACAATCTTGAATGATTTGCGATATCCACTCTTCCGGATTGGATATTTTGTATTGTGGACAGGGACGTTTGTCATTTTTCAATGGATCCTCCACGCTTTTGTTTCAATGCCGTGGCCTTATCCATTTCTTGATTTGTCACCCCCATCTGCTCCCTTATGTGATCAAAATCAAGCAGTCTCTATTGCCAAAATTGTTCCCGTGAAACGCGAGATGATGATTGAAGCAGACGATCATCGAACCATGGGTTATGAAGCTTTGTTTTCCAGTGATCCCCATCATGTTTTGCTTCGAATTATCGAGCGAGGACGGTAA 1122 42.16 MTTDTNTNTLSYWLNWRFFLCAVFLSTAMVVASLLIWKYEGFKRPKSGSRDDSQDSAGSLYEDELWRPCLKGIHPAWLLAYRMLAFAVLFGLILGDAVVVGGRIFLFYTQWTFTLVTLYFGVCFITLKATFLLENPVILPSHLVDTKQDGAYLATSFSIYGCYNSGSSAERTSLDAERGTYVPPTLGGENPDMANTAKSLNSPEDLHERKAAGVGGYAFQIIFQTSAGAVVLTDIVFWFILYPYLLSRGRGLSFFVVTMHSVNAVCLLGETILNDLRYPLFRIGYFVLWTGTFVIFQWILHAFVSMPWPYPFLDLSPPSAPLCDQNQAVSIAKIVPVKREMMIEADDHRTMGYEALFSSDPHHVLLRIIERGR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 109305 111862 + CmaCh05G000240.1 Cma05g00024 294142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00024 373 PANTHER UNCHARACTERIZED 154 328 - -
Cma05g00024 373 PANTHER PROTEIN, PUTATIVE-RELATED 4 123 - -
Cma05g00024 373 PANTHER UNCHARACTERIZED 4 123 - -
Cma05g00024 373 PANTHER PROTEIN, PUTATIVE-RELATED 154 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00024 - - - cmo:103487703 484.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00024 Cma-Chr5:109305 Cma18g00175 Cma-Chr18:887074 1.29E-95 dispersed
Cma12g00021 Cma-Chr12:83166 Cma05g00024 Cma-Chr5:109305 1.07E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g668 . Blo16g01162 . Bda11g01275 Bpe13g01472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01275 . . . . . . . . Cma05g00024 . Car05g00020 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00024 Cma_Chr05 FPKM 22.284313 23.599737 28.10195 26.146214 23.448399 19.954184 24.585228 9.199473 9.091394 9.881145