Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00027 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCCTCCAAGTTTCTTCTGCTACGCTGTCTCCTTCTGGTGTGAACTACGAAGTCGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTCTTGGAGAATTGGGATTCTAATTCTGTGGATCCCTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCTGCTTTGGGGCTACCGAGCCAGAGTTTGTCTGGGGTCTTATCACCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGGCCAATTCCTGCAACCATTGGAAATTTAGAGAACTTGCAGACTCTTGATCTCTCCAACAATGTATTCAGTGGTGTAATACCCAGTTCCCTTGGAGACTTGAAGAAGCTTAATTATTTGCGACTAAATAACAACACCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTTGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTATTGGTAACCCTCTGAGCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCCTTGTCGTTTGCTCCAGATGCTCTCGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTCTTATTGTATTAGTCCTTATTGGACTACTGGTCTGGTGGAGATACAGACACAACCAGCAGATCTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGGCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATATTGGGTAGAGGTGGGTTTGGAATTGTGTTCAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTGCACCGAAACCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTGCTGGTTTACCCATTTATGCCCAATGGCAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAAAGAATAGCGTTGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATCCATCGTGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTGGTTGGAGACTTTGGGCTGGCCAAACTTTTGGATCACAGAGATTCTCACGTGACTACAGCGGTGCGTGGCACTGTAGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTCTTGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAGGGCGTGATGCTTGATTGGGTGAAAAGGTTGCACCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAACTACGACAGAGTTGAGCTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTACTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACGTCGAGACGCCAAGATACCGACTGTGTGAGAAACCCCCTCAACTGTACTCAGATTATATAGAAGAATCTTCTTTGATCGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 45.12 MEPPFLLWKPVFVVLALLQVSSATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGNLENLQTLDLSNNVFSGVIPSSLGDLKKLNYLRLNNNTLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIIGNPLSCGPNNCSAIFPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAALIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVFKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKRLHQEGKLNMMVDKDLRGNYDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHVETPRYRLCEKPPQLYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 126553 129868 + CmaCh05G000270.1 Cma05g00027 294145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00027 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cma05g00027 621 Pfam Protein kinase domain 299 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00027 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 621 - -
Cma05g00027 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 621 - -
Cma05g00027 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Cma05g00027 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cma05g00027 621 SUPERFAMILY L domain-like 31 200 - -
Cma05g00027 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00027 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cma05g00027 621 SUPERFAMILY Protein kinase-like (PK-like) 282 579 IPR011009 -
Cma05g00027 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Cma05g00027 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cma05g00027 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cma05g00027 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00027 Cma-Chr5:126553 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma16g00247 Cma-Chr16:1147203 Cma05g00027 Cma-Chr5:126553 0 dispersed
Cma12g00024 Cma-Chr12:93850 Cma05g00027 Cma-Chr5:126553 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68563 PF00069 Pkinase 4.60E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00027 - - csv:101208885 1161.36