Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00030 ATGGGGGAGAACATGTACGGCATGCGCTCCACTCCCCAATTCTCGCCCAAGTCCTTCCTTTCACCCCACACTCCTATCCTTCCCCTCGATTACCAGACCTTCCTTCCCTCCACCAACTACTTTCCCCGCGATCGGATTCCTGTGTTCGGATCCGATGAACTGCTTTCCGAAGCTGAACCACCTTCCATCACTCCAGATTTTCCGCTCGCTCAAGATGTTCCCACCCTCATCAAGGCCAAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCACGCTTATATTGACTGCCACAAGGTTGGAGCACCGCCGGAGATAGCTTGTTTGTTGGAGGAAATCCGGCGAGAAAATGACAGTCATAAACAAAACGCCATCTCCACGTGCTTCGGAGGCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGATCTGTCAAGGCCCTTTCATGAAGCTTCCTCCTTCTTGAGTGACATTGAACTGCAACTTAGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCTCCTCCAATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAAGTACAAGATGCTCAAATGAGATTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGAACCTTGAAGCTAGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTGCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATGGCGCTGGCAGAGACAACAGGACTAGATCCGAAGCAAATTAACAATTGGTTCATAAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAAGTATGGATGATGTGGGGAATTAA 933 46.95 MGENMYGMRSTPQFSPKSFLSPHTPILPLDYQTFLPSTNYFPRDRIPVFGSDELLSEAEPPSITPDFPLAQDVPTLIKAKILSHPTYPRLLHAYIDCHKVGAPPEIACLLEEIRRENDSHKQNAISTCFGGDPELDEFMETYCDMLVKYKSDLSRPFHEASSFLSDIELQLSNLCAGASTRSSSNEDAMSSDDELNWGEREVQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKMALAETTGLDPKQINNWFINQRKRHWKPSESMQFASMDDVGN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 135056 146436 + CmaCh05G000300.1 Cma05g00030 294148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00030 310 CDD homeodomain 247 297 IPR001356 GO:0003677
Cma05g00030 310 SMART KNOX2_2 125 176 IPR005541 GO:0003677|GO:0005634
Cma05g00030 310 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 308 - -
Cma05g00030 310 Pfam KNOX1 domain 77 118 IPR005540 GO:0003677|GO:0005634
Cma05g00030 310 Pfam KNOX2 domain 129 175 IPR005541 GO:0003677|GO:0005634
Cma05g00030 310 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677|GO:0006355
Cma05g00030 310 SMART KNOX1_2 75 119 IPR005540 GO:0003677|GO:0005634
Cma05g00030 310 ProSiteProfiles 'Homeobox' domain profile. 233 296 IPR001356 GO:0003677
Cma05g00030 310 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981|GO:0006355
Cma05g00030 310 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 67 308 - -
Cma05g00030 310 SUPERFAMILY Homeodomain-like 234 304 IPR009057 -
Cma05g00030 310 SMART HOX_1 235 300 IPR001356 GO:0003677
Cma05g00030 310 Pfam ELK domain 214 234 IPR005539 GO:0003677
Cma05g00030 310 SMART ELK_2 213 234 IPR005539 GO:0003677
Cma05g00030 310 Gene3D - 232 306 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00030 Cma18g00787 CCT
Cma05g00030 Cma18g00787 ECH
Cma04g01746 Cma05g00030 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00030 Cma-Chr5:135056 Cma11g00090 Cma-Chr11:437936 7.00E-88 dispersed
Cma15g01189 Cma-Chr15:7530904 Cma05g00030 Cma-Chr5:135056 9.96E-13 dispersed
Cma12g00026 Cma-Chr12:100879 Cma05g00030 Cma-Chr5:135056 1.08E-17 wgd
Cma18g00787 Cma-Chr18:6949757 Cma05g00030 Cma-Chr5:135056 4.23E-141 wgd
Cma04g01746 Cma-Chr4:8772054 Cma05g00030 Cma-Chr5:135056 1.80E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35006 PF03791 KNOX2 1.90E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00030 - - csv:101210523 483.026