Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00031 ATGGCGGCTTGCGTTTACGCGGTCATCTGCAATTTCATGGCTTCATCCCTTCAACTCCAATTCCGTCTTCCTCCTTCAACCACTCCAGCTCTTCTGCGTCACCGCCCTATTCAATGCGCTACCGACCGCCAGGCATTGTTCGCCCGTATTGCGCCTGTCTATGATAACTTTGGGTCAGCATCGTATTTGGAAACGGATGGCCTTCTCCTGGAGCGGGAGACTGCGTCTTGGATATATGCTGCGGAAGCGGCGATTTGGCGTTCCTCTTATCTCAGAAAGTTGGATCCAATGGCAAGGTGGGTGGAGGGTGATGCTCTCAATTTGCCATTTTCTGACGGCTCTGTCGATGCCATTACGATGGGCTACGGTCTACGAAATGTGCTAGATAAACGGAAAGCTTTGGAGGAGATGCTTAGAGTATTGAAAGAAGGTAGTAGGCTATCAATTCTCGACTTCAACAAGGCTACGCAACCGACTACTGCTGCTATTTCAGGAAAGGAATTGGAAAAGCTTGCTTTAGAGAGAGAGCTTTACCAAAAATGA 543 48.99 MAACVYAVICNFMASSLQLQFRLPPSTTPALLRHRPIQCATDRQALFARIAPVYDNFGSASYLETDGLLLERETASWIYAAEAAIWRSSYLRKLDPMARWVEGDALNLPFSDGSVDAITMGYGLRNVLDKRKALEEMLRVLKEGSRLSILDFNKATQPTTAAISGKELEKLALERELYQK 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 146888 152472 + CmaCh05G000310.1 Cma05g00031 294149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00031 180 Gene3D Vaccinia Virus protein VP39 79 178 IPR029063 -
Cma05g00031 180 PANTHER 2-PHYTYL-1,4-BETA-NAPHTHOQUINONE METHYLTRANSFERASE, CHLOROPLASTIC 94 169 - -
Cma05g00031 180 PANTHER METHYLTRANSFERASE 94 169 - -
Cma05g00031 180 Coils Coil 124 144 - -
Cma05g00031 180 Pfam ubiE/COQ5 methyltransferase family 99 159 IPR004033 GO:0008168
Cma05g00031 180 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 92 160 IPR029063 -
Cma05g00031 180 CDD AdoMet_MTases 99 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00031 K23095 MENG, menG; demethylphylloquinol methyltransferase [EC:2.1.1.329] - csv:101208642 139.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00031 Cma-Chr5:146888 Cma11g01585 Cma-Chr11:10384031 1.02E-09 dispersed
Cma12g00027 Cma-Chr12:103558 Cma05g00031 Cma-Chr5:146888 3.75E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0678 . . . . . . . . . . . . Bma06g00608 . . . . Cma05g00031 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0045812 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00031 Cma_Chr05 FPKM 0.58659 0.743971 1.852599 1.446596 5.042845 5.673817 5.004303 5.188629 5.611989 4.303276