Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00032 ATGGCGATCCAGCTTCATGTCTTATTTTCAGTCCTTTCTATTCTTCTGCTGCTCCCAACTTCGAGTATGGGGAAGCCAAGAGATCAAACTGTGAAAGTATTGTGCGGTAAAGAACTCGAGCACAACACCACGGCCTACGTCCCTAACTTTTTTGGTTCCATGGAAAAGGTTAGACAACAGATCCGAACTTCAGGATTTGGAACGGCCGGCACAGGAAAAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCCCCCCTCGAATGTGTGCTGTGTCATTCTCAAGCACGTACGGTGCTTCCCCAATGCTTCCCTTCCAATGGCGGCCGAACTTTCATCGATGGCTGCTTCATGAGGTTCGAAAACTATATCTTTTTTGATGAATATAAAGGACCCGAAGACACTGCAGTTTGCGGGAACTTGACCCAAAATGACCCCAACTACAGACAAGCAGCCAAGGAGGCAGTGATGCAAGTAGTCAATGTTGCACCAGGCAACAGAGGCTTTGCGAAAGCTCGAGTGGCTATGGCCGGGAGAGCAAATGAGTCCGCAGCTTACGCTCTGGGCCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGATTATGTTTGCAAATTGCTTCTGCTTCAATGTTGTCATGTTTACCTCTATCGGAAGGGCGAGCACTGAACACAGGCTGCTTCATGAGATACTCGAACACAGACTTCCTCAATAAGGACATAAAAATTAGTTCCAGAGGTGCCACAAGAACCGAATTGATAGTTTCGGTCCTGAGTTCTGTTGTTGTTTTGATAATCGGAGGAGCAATTGGTGCTTATATCTGGAAGCACAGATATATACAAAATAAAAGAAAAGGAGGTTCAACTGATGTGAAGAAGTTAGCAAAAACTCTTCAAGATAGTAACTTGAACTTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTGGATAACAAGATTGGACAAGGGGGGTTTGGCTCTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTTAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTTGTAAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTCCTACCGAACAAGAGTCTCGATCGCTTCATTTTTGATACCAAGAACAGTAAAGCTCTTGATTGGGATAAGAGATTTAACATCATCATTGGAACAGTTGAAGGTTTAATATATCTACATGAAAATCCAAAGATCAAAATTATACACAGAGATATAAAGGCCAGTAATATTTTGCTGGATCAAAAGCTCCAGGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAACAAGAGCCATATCAGCACCGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGTCAGTTATCAGAAAAGGCTGATGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATTGTTGCAGGATTGCAATACAATGGCATTCAAGTCTCCGGAAACATTGAAAGTCTGGTCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGGTTATTTGATCCAAATCTCAACCTTCAGAATCACTACAACAAGGAAGTAAAAGATGAGGTATTGAGAGTGGTGCACATAGGGCTCTTGTGCATCCAGGAGATTCCTACTCTACGACCAACAATGTCGAAGATAATGCGAATGCTGACAATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCACCCTTCATGGATGAAATGACCATGGAACTTGATGACTCATGCAAGGACTCACGATATTATTCCAATACGGAGGGCCCTTCTTCAACTGCTACGGTCAGCCATAGTTCTTTTTATCCCAGATAA 1953 43.52 MAIQLHVLFSVLSILLLLPTSSMGKPRDQTVKVLCGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGKGPDASYGLAQCHGDLSPLECVLCHSQARTVLPQCFPSNGGRTFIDGCFMRFENYIFFDEYKGPEDTAVCGNLTQNDPNYRQAAKEAVMQVVNVAPGNRGFAKARVAMAGRANESAAYALGQCWRSLNRSSCRLCLQIASASMLSCLPLSEGRALNTGCFMRYSNTDFLNKDIKISSRGATRTELIVSVLSSVVVLIIGGAIGAYIWKHRYIQNKRKGGSTDVKKLAKTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLPDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTKNSKALDWDKRFNIIIGTVEGLIYLHENPKIKIIHRDIKASNILLDQKLQAKIADFGLARSFQENKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVAGLQYNGIQVSGNIESLVTAMWRHFQAGTVERLFDPNLNLQNHYNKEVKDEVLRVVHIGLLCIQEIPTLRPTMSKIMRMLTMEEEEHLPPPTKPPFMDEMTMELDDSCKDSRYYSNTEGPSSTATVSHSSFYPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 148546 151929 - CmaCh05G000320.1 Cma05g00032 294150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00032 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 6 630 - -
Cma05g00032 650 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Cma05g00032 650 SUPERFAMILY Protein kinase-like (PK-like) 305 616 IPR011009 -
Cma05g00032 650 MobiDBLite consensus disorder prediction 629 650 - -
Cma05g00032 650 Gene3D Phosphorylase Kinase; domain 1 282 396 - -
Cma05g00032 650 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Cma05g00032 650 Gene3D Transferase(Phosphotransferase) domain 1 397 605 - -
Cma05g00032 650 ProSiteProfiles Protein kinase domain profile. 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00032 650 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Cma05g00032 650 Pfam Salt stress response/antifungal 48 127 IPR002902 -
Cma05g00032 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 630 - -
Cma05g00032 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Cma05g00032 650 Pfam Protein kinase domain 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00032 650 CDD STKc_IRAK 327 597 - -
Cma05g00032 650 MobiDBLite consensus disorder prediction 626 650 - -
Cma05g00032 650 Gene3D - 139 240 IPR038408 -
Cma05g00032 650 Gene3D - 28 129 IPR038408 -
Cma05g00032 650 ProSiteProfiles Gnk2-homologous domain profile. 28 129 IPR002902 -
Cma05g00032 650 SMART serkin_6 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00032 Cma18g00785 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00032 Cma-Chr5:148546 Cma14g00663 Cma-Chr14:3324305 1.22E-164 dispersed
Cma05g00032 Cma-Chr5:148546 Cma05g00034 Cma-Chr5:152841 0 proximal
Cma12g00028 Cma-Chr12:105679 Cma05g00032 Cma-Chr5:148546 0 wgd
Cma18g00785 Cma-Chr18:6945003 Cma05g00032 Cma-Chr5:148546 1.80E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68564 PF00069 Pkinase 1.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00032 - - cmax:111492443 1287.32