Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00034 ATGAAGACTGGATCGCCACTTGTTCCCCGATGTGGGTTGTTGATTATCATCAGCGCTCTTCTGTTACTTGAAACATCGACAGTGGCAGACCCCAGATCCCAAACCGCGAAGATACTTTGTTCAACTGTGTTAGAGCATAATACAACGGCTTTTGTACCCAATTTCGTGAGCACAATGCAAGCAATCAGTGACCAAATGCGAACTGGTGGTTTTGGAGTGGCACGTGTGGGTAAAGGGCCGGACGCCAACTACGGACTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTGTGTTACGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGACGGCTGCTTCATGAGGGCTGAGAATTACAGCTTTTATGAGGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCGTTTATGGACAGTCGACCAGGCAGGCTGTGGCCCGTGCAGTCGAAGCTGCACCCAACAATGGAGGGTATGCGAGAATTCAAGTGGCTCTCCCTGGAACCCCCAATGCCTCGGTTTACTTGTTGGCTCAGTGCTGGAGGAATCTGAATCGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCTGAAGCAAGAGCCCTCAACACAGGTTGTTTCATGAGATACTCTAATGTTGACTTCTTAAATGCAGAAGCTCAAGCTACAAGGTCAAGAGGCACCATTGTAGCAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTGGTTGGAGTGTTGATTGGCATCTACATCTGGAATAATAGATATGTGAACAACAAACGAAGGGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGGGTCCTTTGCGGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACCGTTTATAAGGGAGTTCTGTCGGATGGAAGAGAGATAGCTGTGAAGAGGCTGTTCTTCAATAACAAACATAGAGCAGCAGATTTTTACAATGAAGTCAACATAATTAGCAGTGTGGAGCACAAAAATTTAGTGAGGTTGCTTGGGTGTAGTTGCTCTGGACCTGAAAGCCTGCTGGTGTATGAATTCCTTGCCAACAGAAGTCTGGACCGCTTCATTTTTGATGGAGAAAGAGGTAAATCACTGAATTGGGAGAAGAGGTTTGATATTATTGTGGGAACGGTTGAAGGGTTGGCTTACCTGCATGAGAACTCAAAAAACAAGATCATTCACAGAGACATCAAGGCTAGTAACATACTGCTGGACTCAAGGCTTCGAGCTAAAATTGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCTGGAACCTTGGGATATTTGGCGCCAGAGTACTTAGCTCATGGGCAGCTGACGGAGAAGGCAGATGTGTACAGTTTTGGTGTGGTGTTGCTGGAGACGGTGACCGGGAGACAGAACAGCAGGAGCAAAGCCTCGGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCACTTTCAAGCGGGGACAATGGAAAGGATATACGACCCAAACCTTATGGTTGAAGGAGATGGAAGCATGAAAGAGGAGATATTGAGAGTGGTGCAGATCGGGCTTCTTTGCACACAGGAGAGCGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGAGGAAGAAGGAAGAGAAGCTTCCGGCGCCGACCAACCCACCCTTCATGGACGAGAGGACGATGGAACTGAACGACACCAGTGAGGACCCATCCTACTTCAACATGACGGAAGCGTCTTCCTCAGCGGCCACCGTGACCCACAGTTCATTTCATCCCAGGTAA 1953 47.88 MKTGSPLVPRCGLLIIISALLLLETSTVADPRSQTAKILCSTVLEHNTTAFVPNFVSTMQAISDQMRTGGFGVARVGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYEEFSGPLDRAVCGNNSITNSVYGQSTRQAVARAVEAAPNNGGYARIQVALPGTPNASVYLLAQCWRNLNRSSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNVDFLNAEAQATRSRGTIVAIVVSLVSSVAVLVVGVLIGIYIWNNRYVNNKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLANRSLDRFIFDGERGKSLNWEKRFDIIVGTVEGLAYLHENSKNKIIHRDIKASNILLDSRLRAKIADFGLARSFEEDVSHISTAIAGTLGYLAPEYLAHGQLTEKADVYSFGVVLLETVTGRQNSRSKASDYLESIVLIAWKHFQAGTMERIYDPNLMVEGDGSMKEEILRVVQIGLLCTQESASLRPTMSKVLQMLRKKEEKLPAPTNPPFMDERTMELNDTSEDPSYFNMTEASSSAATVTHSSFHPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 152841 155350 - CmaCh05G000340.1 Cma05g00034 294152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00034 650 SMART serkin_6 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00034 650 CDD STKc_IRAK 330 599 - -
Cma05g00034 650 ProSiteProfiles Protein kinase domain profile. 324 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00034 650 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Cma05g00034 650 Pfam Protein kinase domain 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00034 650 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Cma05g00034 650 Gene3D - 33 134 IPR038408 -
Cma05g00034 650 Gene3D - 143 244 IPR038408 -
Cma05g00034 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 631 - -
Cma05g00034 650 MobiDBLite consensus disorder prediction 623 650 - -
Cma05g00034 650 SUPERFAMILY Protein kinase-like (PK-like) 309 632 IPR011009 -
Cma05g00034 650 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Cma05g00034 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cma05g00034 650 MobiDBLite consensus disorder prediction 603 650 - -
Cma05g00034 650 Gene3D Transferase(Phosphotransferase) domain 1 400 609 - -
Cma05g00034 650 Pfam Salt stress response/antifungal 47 132 IPR002902 -
Cma05g00034 650 Pfam Salt stress response/antifungal 150 241 IPR002902 -
Cma05g00034 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 14 631 - -
Cma05g00034 650 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00034 Cma-Chr5:152841 Cma12g00028 Cma-Chr12:105679 0 dispersed
Cma05g00032 Cma-Chr5:148546 Cma05g00034 Cma-Chr5:152841 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68565 PF00069 Pkinase 7.10E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00034 - - cmax:111492443 1252.27