Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00048 ATGGCTCACATCATGAAAGAAGTCTTCTTCAACTCTCTCTGCTTTTGCTTCTTCTTCTGTTCCGTGTTTCAATTCAATCGGGTGTCCTCACAAACTGGAACAGAACGTGCTGCCGTCCCGCCGAGAGGTTGGAACTCCTATAATTCATTTTCCTGGATTATTTCTGAAGAAGAATACCAAAAAAATGCAGAGGTTGTGGCCAATCGGCTTAAGTCTAAGGGATATGAGTACGTGGTTGTGGATTACCTGTGGTATAGGAGAAAGGTTCCTGGTGCTTACGCTGATTCTCTTGGATTCGATGTGATTGATGAATGGGGGAGGATGGTCCCGGACCCGAGTCGATGGCCTTCCTCGCAAGGTGGAAAGGGATTCACTGAAGTAGCTAAGAAAGTTCATGATATGGGTTTGAGGAGCTTCAAAAGCCTTCTTAGGTCCCTTTATCAACAATATGCTGATTGGGGTGTTGATTTTGTGAAACATGATTGTGTCTTCGGCGATGATTTGGATTTACCTCAAATAAGCTTTGTATCCGATGTTCTTAAACAACTTGAGCGCCCAATATTGTTTTCTCTGTCCCCTGGAAAAACTGCGACGCCAGCCATGGCCAAGGATGTAAGTGGGCTGGTTAACATGTATAGAATATCAGGTGAGGTATATGCTGCTGTCTTCAATCTCAACAACGAGAAGCCTCAGAGCTTGCGGAGGCACTTCCGGGCAAGGGCAGGGTCAACCTTCCTAAGTGAAGGCTGCGTCGATTCCAAATTATTGCTCATTCACCAAACTCCAATTTTTCGTCTAGATCTCTCTTCTTCCTCTATTTCACTACTTGCGATTTCTGGATCTCGAGCTTCAACCAAACCAAACCAAACCAAACCAAACGAGATACAAATGTCAAAACCCTGGGGTGGAATCGGAGCCTGGGCCGCTGATGCCGAGCGTGCTGAGGATGAGGAGCGAGAGGCGCAAGCTGCTGCGGCCGCTTCCCAAGCAGAATCCAAGAATTTCCCTAGCCTTAGGGAAGCCGTCAGCACCAAGCCCAAGAAAAAGAAGATGTCGCTGTCGGAATTCACTATGGGGACCTTGACGGGTCATGGCGCCGGCGGTAGGCTAACGGACAGCCAGGGCTTGACCCCGGAGGAGATGATTCGGCTTCCAACTGGTCCAAAAGACCGCTCTGGTGAGGAAGTACGTTCTGGCCGGCTTGGTGGGGGATTTCCCACTTATGATCGCCAAGGTATGTCTGCTGGTCGATTTCGAGACCGTGATGATGGCGATGGGTCCTGGGGTGGTGGTCGACGATCTTATGGCGGGTTTGATGAGGAACGCAGGGGCTCATCTCCTAGGGCTTCCAATTTCGATCAACCTTCGAGGGCTGACGAGGTGGATAATTGGGCAATGACGAAGAGATCTCCCACATTGGATTCAGGTCGACAAAATAGGTATGGGTCGCTAGGCGGTGGCGTGGGTGGAATTGCATCTAGGGCAGACGAGGTCGATAACTGGGCACGTGAGAAAAAGCCTATTCCATCGAGATCCTCCACATTCGGTTCCGGTTATCGTGAGGCTAATGAGCCTGATCGATGGGGTAGAGGCCGTTCACGTGATAGTGTCACAGAACGACCCCGATTAGTGTTGGATCCACCCAAAGGTAATGTCGTAACAAATGAAGCAACAAGGACGAACAAGCCAAACCCTTTTGGAGCAGCAAGGCCGAGAGAGGAGGTTTTGGCCGAGAAAGGATTGGATTGGAAGAAGCTGGATACAGAAATTGAGGCCAAAAAAACCAGTAGGCCAACTAGTGCTCACTCTAGCAGGCCTTCGAGTGCTCAATCCAGCCGTTCGGAGGGTCCAGGATTACAGGGCGTAGAAAATGTGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAACCTAGGGAGGTTTTGCTGGAGGAACGTGGCAAGGATTGGCGAAAGATAGATCTGCAACTTGAGCATCGTGCTGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAGGAGGAAATTAATGTTCTAAGAAAGGAACTTGAGGAAGGCTTACATCTGAATACCAACAAAGAATCGGTGCAAGAATCTGCTGGAGAGATGCAAAAGCTGCGTGACAGAATAAATAAAAAAGAACGTGAACTGGAGATGTTGATCCTTGATTTGGATGATAAAGTTCGGTTTGGGAAGAAAGCCACTGAAAGACCTGGCTCTGGAGCAGGCAAGGCTGCTGCCTTTCAAGAAAGACCGCCTTCTCAAGGATCCTTTGATGAGTCCAGAAGTTTTGAGTCTGTGGACAGACCTCGATCACGAGGCACTACGGATGTATGGAGTAGGTCTGCTGATGATAGAAAACCAATCCAAGGTGCCAGAGATGGAGGATTTTTGGGTAACAGAAACATAGAGAGGTCGAGGGATAGATGCCAAGATACATTGGTCTCACCTTTTACGATGTTTTTTCTTTTCTTTTTTGAGCTCCAGAAATTGGAGGCGAGAGAACTACTTGTCTGGTGCCAAACTTTTGTTACCCTTCAAACGATGTAA 2559 48.42 MAHIMKEVFFNSLCFCFFFCSVFQFNRVSSQTGTERAAVPPRGWNSYNSFSWIISEEEYQKNAEVVANRLKSKGYEYVVVDYLWYRRKVPGAYADSLGFDVIDEWGRMVPDPSRWPSSQGGKGFTEVAKKVHDMGLRSFKSLLRSLYQQYADWGVDFVKHDCVFGDDLDLPQISFVSDVLKQLERPILFSLSPGKTATPAMAKDVSGLVNMYRISGEVYAAVFNLNNEKPQSLRRHFRARAGSTFLSEGCVDSKLLLIHQTPIFRLDLSSSSISLLAISGSRASTKPNQTKPNEIQMSKPWGGIGAWAADAERAEDEEREAQAAAAASQAESKNFPSLREAVSTKPKKKKMSLSEFTMGTLTGHGAGGRLTDSQGLTPEEMIRLPTGPKDRSGEEVRSGRLGGGFPTYDRQGMSAGRFRDRDDGDGSWGGGRRSYGGFDEERRGSSPRASNFDQPSRADEVDNWAMTKRSPTLDSGRQNRYGSLGGGVGGIASRADEVDNWAREKKPIPSRSSTFGSGYREANEPDRWGRGRSRDSVTERPRLVLDPPKGNVVTNEATRTNKPNPFGAARPREEVLAEKGLDWKKLDTEIEAKKTSRPTSAHSSRPSSAQSSRSEGPGLQGVENVVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLEHRAVDRPETEEEKMLKEEINVLRKELEEGLHLNTNKESVQESAGEMQKLRDRINKKERELEMLILDLDDKVRFGKKATERPGSGAGKAAAFQERPPSQGSFDESRSFESVDRPRSRGTTDVWSRSADDRKPIQGARDGGFLGNRNIERSRDRCQDTLVSPFTMFFLFFFELQKLEARELLVWCQTFVTLQTM 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 192132 199334 - CmaCh05G000480.1 Cma05g00048 294166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00048 852 MobiDBLite consensus disorder prediction 523 542 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 765 794 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 587 640 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 310 573 - -
Cma05g00048 852 PRINTS Glycosyl hydrolase family 27 signature 146 163 IPR002241 GO:0004553|GO:0005975
Cma05g00048 852 PRINTS Glycosyl hydrolase family 27 signature 172 190 IPR002241 GO:0004553|GO:0005975
Cma05g00048 852 PRINTS Glycosyl hydrolase family 27 signature 34 53 IPR002241 GO:0004553|GO:0005975
Cma05g00048 852 PRINTS Glycosyl hydrolase family 27 signature 69 84 IPR002241 GO:0004553|GO:0005975
Cma05g00048 852 Coils Coil 311 331 - -
Cma05g00048 852 Coils Coil 699 726 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 414 428 - -
Cma05g00048 852 Pfam Plant specific eukaryotic initiation factor 4B 297 799 IPR010433 GO:0003743
Cma05g00048 852 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 297 810 IPR010433 GO:0003743
Cma05g00048 852 SUPERFAMILY (Trans)glycosidases 37 225 IPR017853 -
Cma05g00048 852 Gene3D Aldolase class I 31 245 IPR013785 -
Cma05g00048 852 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 297 810 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 736 803 - -
Cma05g00048 852 MobiDBLite consensus disorder prediction 599 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00048 Cma-Chr5:192132 Cma20g00766 Cma-Chr20:3618353 1.44E-25 dispersed
Cma12g00039 Cma-Chr12:149021 Cma05g00048 Cma-Chr5:192132 4.12E-90 transposed
Cma12g00038 Cma-Chr12:142906 Cma05g00048 Cma-Chr5:192132 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00048 - - csv:101206526 861.677