Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00049 ATGAATTCGGGGACAGTAAGAGTGCGTTTGGTTTTCGAAGAGGGGCACCTACTGAGCAAGCCGCACAGGAAAAATGGACTGAAACGGAGTTGGGTTCTTCTCAAACCCCACCTCCATTCCATTTCCGACTTCTCCTCCTATCTTCTCGACCTTTTCCTTCTTCGCGATGCTTGTCCTCATGGCCTCCTTCTTTCTATGGATGGGTTTGTTCTACCACCCTTTGAGCCTACTTCTATTTTGAAGGATGGAGATATTGTTAGGGTGAACAAGAATGAGGACAATGTGATTGCAGTTGAGACGATGGCAGACATGGAGGAGGGGCAACCTGCTGGTCTAGATGTTCAGCTTCTAGCCAACGAGGAGCTTGTGCAGGATTGTACTGACTACAAAAATGAAGCAGATCAAGATGATGAACCTTATGATCTGCTGAATCAGTTGGAAGGCACATTGGATGTGGGAAGCAAAGAGAAAACAGTTTGCAGGAAAAGGAAGGCACTGAAAACAGTTCACAGCTCAAAGAAGAAGAAAAATAGATTTGCTCCAACTGACAAATGTCTGGCTTCTCCATCAAATCTTCAGCAGTTTCATACAGACCATAATTGTAGATCGCAGCAGGAAGTTTCTCTTTCTGAAAAGAGTCTGGTCGAGAAGCGCAAATCATCCAATGGTCATACTGATACAAACAACAACCAAAAGCAGGTACAGCAACGAATAGTTCGAAATAGTAACGGTAAGTTACCTGTTGAGAATTACTTTGAGGACTCTGAACAGCTAGATGGCAGTAGTGTTGATGAAGGAATTATCCCCGTGGAAACTAGACCAGGACATGTTCGTTTTCTGCCTCTTGATCAAGGAGAAGCTAACCAGTTTGTGCGTCCAGCTCAAGCTTCAATGGACACCGCGCGGTCAAATGGGATAACAATTAAGAATGAAAAAAAATGGGGTAAAGGGAAATCCTCATTTTGGACGAGTAATTGCAACTGTGAAGGAGAAAGTTCCAAGTCACAAGCTAAAAAAGATTTATCAAGTAGGAAATGTCCAATTGACTTCAATGAACTCAGACCTTGTTTGAGCTTGCCTGAGAGAGGTGATATAATTGCATATCGTTTAATTGAATTATCATCGTCATGGACTCCACAACTTTCCTCCTTCAGAGTTGGAAAGGTATCATGGTGTAATCCTGAAGCAAATAAGATTATGATGATTCCTGTTCCAGAATATCCGTTTGTTTTTAAGGCAATGAACGAGGAAGCAGTCAAGCATCCATATGCGGAAGATGGGTCTTTAAAGGCTGATTACTCCTCACTGGTTGACATCAGAATCGTTGAGCATGAAAACTCGCTAGGTTTTGAAGCTGGTGGTGGTGGTAATATTAGTGAAGCATCTTCTTCAAAACAAAGCTGGAGCAAGTGGGAGAAGCATTCCATTGCACCAAAACAAAGCTGGAAGAAGTGGGAAAACGATAGCAGTAAACAATGGGAGAACCAGGGCAGGGCATCAAAACAAAGCTGGAGAAAGAAGTGGGAAAACGATACCAGTAAACGGGAAAATGGAAAGGAAAATGCATGGGATGACATTGTCCAGGCTTCCAGCGCGAAGAAAGCTAATTTGTCCAAGGAAGTTGGATGGGGAAGAGGGGAGAAGAAAGCTTGGAAAGGAGCTTCATAA 1668 43.17 MNSGTVRVRLVFEEGHLLSKPHRKNGLKRSWVLLKPHLHSISDFSSYLLDLFLLRDACPHGLLLSMDGFVLPPFEPTSILKDGDIVRVNKNEDNVIAVETMADMEEGQPAGLDVQLLANEELVQDCTDYKNEADQDDEPYDLLNQLEGTLDVGSKEKTVCRKRKALKTVHSSKKKKNRFAPTDKCLASPSNLQQFHTDHNCRSQQEVSLSEKSLVEKRKSSNGHTDTNNNQKQVQQRIVRNSNGKLPVENYFEDSEQLDGSSVDEGIIPVETRPGHVRFLPLDQGEANQFVRPAQASMDTARSNGITIKNEKKWGKGKSSFWTSNCNCEGESSKSQAKKDLSSRKCPIDFNELRPCLSLPERGDIIAYRLIELSSSWTPQLSSFRVGKVSWCNPEANKIMMIPVPEYPFVFKAMNEEAVKHPYAEDGSLKADYSSLVDIRIVEHENSLGFEAGGGGNISEASSSKQSWSKWEKHSIAPKQSWKKWENDSSKQWENQGRASKQSWRKKWENDTSKRENGKENAWDDIVQASSAKKANLSKEVGWGRGEKKAWKGAS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 199979 203666 + CmaCh05G000490.1 Cma05g00049 294167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00049 555 MobiDBLite consensus disorder prediction 500 522 - -
Cma05g00049 555 Pfam Coilin N-terminus 6 228 IPR031722 -
Cma05g00049 555 MobiDBLite consensus disorder prediction 476 491 - -
Cma05g00049 555 MobiDBLite consensus disorder prediction 540 555 - -
Cma05g00049 555 PANTHER COILIN P80 254 549 IPR024822 -
Cma05g00049 555 PANTHER COILIN P80 1 236 IPR024822 -
Cma05g00049 555 MobiDBLite consensus disorder prediction 184 210 - -
Cma05g00049 555 MobiDBLite consensus disorder prediction 457 474 - -
Cma05g00049 555 MobiDBLite consensus disorder prediction 452 555 - -
Cma05g00049 555 MobiDBLite consensus disorder prediction 164 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00049 K13150 COIL, CLN80; coilin - csv:101208799 686.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00049 Cma18g00754 CCT
Cma04g01777 Cma05g00049 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00754 Cma-Chr18:6750348 Cma05g00049 Cma-Chr5:199979 3.79E-93 wgd
Cma04g01777 Cma-Chr4:8936795 Cma05g00049 Cma-Chr5:199979 5.67E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g622 . . . . . . . Bma15g00225 . Cmo18g00758 . Cma18g00754 . Car18g00687 Sed06g1696 Cpe09g00546 Cpe01g01574 Bhi07g01803 Tan04g0152 Cmetu10g1657 . Hepe10g0055 . . Cla05g02596 Cam05g2787 Cec05g2825 Cco05g2857 Clacu05g2789 Cmu05g2637 Cre05g2753 Cone13ag1090 Cone19ag1079 . Cone12ag0681 Lsi04g00605 Csa05g02279 Chy10g00845 Cme10g00585 Blo06g00843 . . . . . . . . . . Cma04g01777 Cma05g00049 Car04g01802 Car05g00038 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012531 0 4 0 0 0 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 6 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00049 Cma_Chr05 FPKM 6.260132 7.536801 7.561516 7.530238 7.087915 7.744416 8.170557 11.745309 12.913952 11.73618