Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00052 ATGGCCATTAGCAAATTTATTTTGGTTCCTTTTCTTTTGATTGTTCTAGTTTCAGGATTGGGTGAAAGCTTTGAATTCGATGAGAAGGAGTTGGCGACAGAGGAAAGTCTATGGCGGCTGTATGAGAGGTGGGGTAACCACCACACTATCTCAAGGGGCCTAAAGGAGAAGCATAAACGTTTCAATGTGTTTAAAGAGAACGTGAACCATGTGTTCACTGTGAACCAAATGAACAAACCATACAAGCTGAAGCTGAACAAGTTCGCGGATATGTCCAACTCTGAGTTTGTGAGCTTCTATGCTCGCTCCAATATTAGCCACTACAGGAAGTTACATGGCAAAAGATCAGGTGGATTTATGTATGAGCAGGCTACAGATCTTCCATCATACATCGACTGGAGGGAAAGAGGAGCTGTCAATGACATCAAAGAGCAAGGCAAATGTGGTAGCTGTTGGGCGTTTTCAACTGTGGCTGCAGTTGAAGGAATCAACCAAATCAAAACCAACCAGCTATTATCTCTATCAGAGCAGGAGCTGCTCGACTGCAATTTCAGGAACAAAGGCTGTAACGGAGGATTCATGGAGATCGCATTCGATTTCATAAAGAGAAATGGTGGAATCGCCACTGAGAACAACTATCCGTACCACGGCGCAAGAGGATTGTGTCGCTCATCCAGAATATCTTCACCGACAGTAACAATCGATGGATATGAAAGCGTACCTGAAAACGAGAATGCCCTGATGCAAGCCGTGGCAAACCAACCAGTCTCAGTCGCCATCGACGCCGTGGGAAGAGATTTCCAATTCTACTCGCAGGCAAGTTTGGGGTTCATTCGAGAAATCGATTGGTTGACTATAATAATATCTTCAGGCAATGTTAATCTTAAAAGTGTGGGAAAAGTGCAGGGAGTGTTCGATGGATACTGTGGAACGGAGCTGAATCACGGAGTGGTGGCGATTGGTTACGGAACAACAGAAGAGGGAACAGATTACTGGATGGTGAGGAACTCGTGGGGAGTTGGATGGGGAGAGGAAGGTTACGTAAGGATGAAGCGAGGAGTGGAGAAGGCGGAAGGGCTGTGTGGAATAGTGATGGAAGCCTCTTATCCCATCAAATACTAG 1122 45.63 MAISKFILVPFLLIVLVSGLGESFEFDEKELATEESLWRLYERWGNHHTISRGLKEKHKRFNVFKENVNHVFTVNQMNKPYKLKLNKFADMSNSEFVSFYARSNISHYRKLHGKRSGGFMYEQATDLPSYIDWRERGAVNDIKEQGKCGSCWAFSTVAAVEGINQIKTNQLLSLSEQELLDCNFRNKGCNGGFMEIAFDFIKRNGGIATENNYPYHGARGLCRSSRISSPTVTIDGYESVPENENALMQAVANQPVSVAIDAVGRDFQFYSQASLGFIREIDWLTIIISSGNVNLKSVGKVQGVFDGYCGTELNHGVVAIGYGTTEEGTDYWMVRNSWGVGWGEEGYVRMKRGVEKAEGLCGIVMEASYPIKY 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 211386 212739 + CmaCh05G000520.1 Cma05g00052 294170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00052 373 Pfam Papain family cysteine protease 127 371 IPR000668 GO:0006508|GO:0008234
Cma05g00052 373 CDD Peptidase_C1A 128 370 IPR039417 -
Cma05g00052 373 PANTHER CYSTEINE PROTEASE 25 272 - -
Cma05g00052 373 PANTHER CYSTEINE PROTEASE 302 372 - -
Cma05g00052 373 Pfam Cathepsin propeptide inhibitor domain (I29) 41 96 IPR013201 -
Cma05g00052 373 Gene3D Cysteine proteinases 17 373 - -
Cma05g00052 373 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Cma05g00052 373 PRINTS Papain cysteine protease (C1) family signature 315 325 IPR000668 GO:0006508|GO:0008234
Cma05g00052 373 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508|GO:0008234
Cma05g00052 373 SMART pept_c1 127 371 IPR000668 GO:0006508|GO:0008234
Cma05g00052 373 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 302 372 - -
Cma05g00052 373 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 272 - -
Cma05g00052 373 SMART Inhibitor_I29_2 41 96 IPR013201 -
Cma05g00052 373 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 313 323 IPR025660 -
Cma05g00052 373 SUPERFAMILY Cysteine proteinases 33 371 IPR038765 -
Cma05g00052 373 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00052 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - csv:101205816 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00052 Cma-Chr5:211386 Cma11g01732 Cma-Chr11:11510182 6.90E-111 dispersed
Cma12g00042 Cma-Chr12:161778 Cma05g00052 Cma-Chr5:211386 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g599 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00052 . Car05g00040 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00052 Cma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0