Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00053 ATGGCACGCCAATTTGTTGTCCTTGCTCTCCTCCTCTTCGCCCTTGTCGGCTTTGCCTGCGCAGCGTCCCCCGCCGAATCCCCAAAGGGCTCTGCTAATAACACCGACGTTGGAGATCTCTTGGCTCCCGGCGCTGACAAAGAGATAGGAAACACTGATGGGGGTGACGCTACCGACGGCAGCGACGACGTGGTTGAAGGCCCAATCGGAGGACCTGGCGTTCCTGGAGGTGAATCTGTCCCCGCCGAAGCTCCCAAGAGCGGTGCCTCTGCCGTGGAATTGTCTGCCGTAGCTGCCCTGAGACACGACCGGTTTCCGTCGGAAAACGGCTTACCTGACCTCGGCTTTTGTCCGCCGGCGTTCGCTACGAGTTTCAAGTCGGCCATGGGAGAAACTGGTGTCATCCGGCTTCAGAGAAGTTTGGACCCGGCCGCTCGAGAGTTCCGACCCGGAAACTTCAGTAATCTGCCTCCCGTTGTTGGGCCGCCCGTCTGCCATGTTTACTATTCCTTCGGTGCTCCGTTTCCACCGTCGATGACCGAACTGCAAGTGGAACCGTTTAGCAATTCTGTGATAACGTATTCCCCTAATTTTCCGGTTAATTTTGATCCGGTGTTTGTTACTCCAGTGGAGGAAATTGCGGTGCCGCAGGTTCAGCCGTTGTCGTCGTGTCCGACTCGGTCGCTGTTACTGAGTGCGGTGCCTAGTGACGTGAGCGAGCCAGTGGTGCGAAGGGATTTGGAATGGTTTGGGGATGTGAGAGGGGTTCAGATGGAGAGAATCAGGGATGGAATCCTGACCGTTCATTTTTACGATCTGAGGCATGCAGAAAAGGCCTTTCGAGAGATGCGGAACCAACATTCGATGCGTCAAAAACAACTTCGCAACCAACATTCTTGGTTTTCGCAGAACAGTTTCGACACGCCACCGCGGTTGGCTCGTGCCCTAATCGGCGGCTGTGCTGTGTGGGCCGAATTCGTTATTCCGACTAATAACGCCGCCGTATTGGACTGGAACAATCAAGGCACCGTCGTTATTTTCAATTTGGAGTTGGATGTCTCCGCTTCTACTCTCAGGGAAATCTTCGAGCGTTTTGGCCCCGTGAAGGAATTTAGGGAGACGCCATTGAAGAAGCACCAACGGTTCGTTGAGTATTTTGATGTTAGAGATGCCGCTAAGGCCGTTAAAGAGATGAACGGTAAGGAAATACACGGCAAACCGGTCGTCGTTGAGTTCAGCCGTCCTGGGGGCAATGGCCGGAAATTCTTCAATCCCATGGTCGCCTCCAGAACACTAGACACTGGATACCACCAGCAGTCAACCTCGTCTCGGCCTTCGAAGCTGTCTGGTCGTTTCAAAGACCCACATCGTCCATTCTACCCGCAAGCGCAAATTTTCTCCAAGAAGGTGCAATATGTGAGCGGCCGGAGATTAAACAATGCAGATGAACTGATGGACAAGTTGCAGCCATTGAATTGCAGTGGAAATACAGGAAATGGAATTGAAATAGGGGCCTCAGTGGACACTTCGAAGGGGATAAATGCAAAGAAGATCATCAATAAGCAATCTCCAACCAGCTCAAAACAAGGAGCATTTTCTCAACCTAGGATTAATTTTAGGTTGAGGAAGAACAACTTCTTGAAGAAATCTGACCCGTGTTTCTTAATAAGCGAAAACGCAATGGATGCAGAAACACCCGATTGCAGAGACTCCAGAACTACGGTTATGATCAAGAACATACCCAACAAGTATAATCTGAAGTTATTACTGAAGACTCTGGACAAGCACTGCGTGAAGTGCAACGAGGAGATGGGCAACGATGGAAAGGGCCTTCCTTTGTCTTCCTACGATTTCGTATATCTTCCTATTGACTTCATCAATAAATGCAATGTGGGATATGGGTTTGTGAATATGACCTCCCCACAAGGAGCATGGAGACTGTACAAAGCTTTCCATCTCCAAGCCTGGCAAATCTTCAACTCCAGAAAGATCTGCCAGGTTACCTACGCTAGACTTCAGGGTTTAGAAGCACTGAAGGAGCACTTCAGGAACTCAAAATTTCCATGCGAAATGGAGCAGTATGAGTTGCCGGTGGTGTTTTCGCCTCCTCGGGATGGCATTCAATTGACAGACCCGCTTCCCGTTGCCGGAAACATGCATGATGGTGATGGAGAACACCCGTGTGATGCCACCGAGACCACCACAGATGAGTCATCGGAGGCAGTGGTGTGTGAGGAAGGTGATGATGGTAAAGAGGAGGAAGGTGATGATGGTAAAGAGGAGGAAGGAGACAACAGCAGGAGATCAGAAGATTGGTAA 2319 50.71 MARQFVVLALLLFALVGFACAASPAESPKGSANNTDVGDLLAPGADKEIGNTDGGDATDGSDDVVEGPIGGPGVPGGESVPAEAPKSGASAVELSAVAALRHDRFPSENGLPDLGFCPPAFATSFKSAMGETGVIRLQRSLDPAAREFRPGNFSNLPPVVGPPVCHVYYSFGAPFPPSMTELQVEPFSNSVITYSPNFPVNFDPVFVTPVEEIAVPQVQPLSSCPTRSLLLSAVPSDVSEPVVRRDLEWFGDVRGVQMERIRDGILTVHFYDLRHAEKAFREMRNQHSMRQKQLRNQHSWFSQNSFDTPPRLARALIGGCAVWAEFVIPTNNAAVLDWNNQGTVVIFNLELDVSASTLREIFERFGPVKEFRETPLKKHQRFVEYFDVRDAAKAVKEMNGKEIHGKPVVVEFSRPGGNGRKFFNPMVASRTLDTGYHQQSTSSRPSKLSGRFKDPHRPFYPQAQIFSKKVQYVSGRRLNNADELMDKLQPLNCSGNTGNGIEIGASVDTSKGINAKKIINKQSPTSSKQGAFSQPRINFRLRKNNFLKKSDPCFLISENAMDAETPDCRDSRTTVMIKNIPNKYNLKLLLKTLDKHCVKCNEEMGNDGKGLPLSSYDFVYLPIDFINKCNVGYGFVNMTSPQGAWRLYKAFHLQAWQIFNSRKICQVTYARLQGLEALKEHFRNSKFPCEMEQYELPVVFSPPRDGIQLTDPLPVAGNMHDGDGEHPCDATETTTDESSEAVVCEEGDDGKEEEGDDGKEEEGDNSRRSEDW 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 213722 218217 - CmaCh05G000530.1 Cma05g00053 294171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00053 772 MobiDBLite consensus disorder prediction 707 772 - -
Cma05g00053 772 PANTHER RNA BINDING PROTEIN 182 760 - -
Cma05g00053 772 PANTHER TERMINAL EAR1-LIKE 1 182 760 - -
Cma05g00053 772 MobiDBLite consensus disorder prediction 739 760 - -
Cma05g00053 772 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cma05g00053 772 Gene3D - 223 306 IPR012677 -
Cma05g00053 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 408 IPR000504 GO:0003723
Cma05g00053 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 415 IPR000504 GO:0003723
Cma05g00053 772 SMART rrm1_1 343 411 IPR000504 GO:0003723
Cma05g00053 772 SMART rrm1_1 228 297 IPR000504 GO:0003723
Cma05g00053 772 CDD RRM1_EAR1_like 226 291 - -
Cma05g00053 772 SUPERFAMILY RNA-binding domain, RBD 343 652 IPR035979 GO:0003676
Cma05g00053 772 MobiDBLite consensus disorder prediction 24 86 - -
Cma05g00053 772 Gene3D - 336 421 IPR012677 -
Cma05g00053 772 SUPERFAMILY RNA-binding domain, RBD 219 290 IPR035979 GO:0003676
Cma05g00053 772 Pfam RNA recognition motif 2 572 683 IPR007201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00053 - - - csv:101208321 950.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01791 Cma05g00053 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00053 Cma-Chr5:213722 Cma17g01399 Cma-Chr17:9279408 1.12E-25 dispersed
Cma15g00705 Cma-Chr15:3396173 Cma05g00053 Cma-Chr5:213722 1.32E-20 dispersed
Cma12g00044 Cma-Chr12:167857 Cma05g00053 Cma-Chr5:213722 1.64E-14 transposed
Cma12g00043 Cma-Chr12:163908 Cma05g00053 Cma-Chr5:213722 0 wgd
Cma04g01791 Cma-Chr4:9038282 Cma05g00053 Cma-Chr5:213722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00053 Cma_Chr05 FPKM 1.493316 1.520024 0.510835 0.416005 0.0 0.509948 0.188137 0.0 0.14808 0.0