Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00055 ATGGCGCTCGCTTTCGATGAGTTTGGGAGGCCATTTATAATCTTGAAGGAGCAGGAGCAGAAGACCAGATTGAGGGGCCTCGATGCTCAGAAGGCTAATATTGCTTCTGGTAAAGCTGTTGCTCGTATCCTCAGGACCTCGCTCGGTCCTAAGGGCATGGACAAGATGCTCCAGAGTCCTGATGGCGACGTTACAATAACAAACGACGGTGCAACAATCTTGGAGCAGATGGATGTTGATAATCAAATTGCAAAATTGATGGTTGAGTTGTCTCGAAGTCAGGATTATGAGATTGGTGATGGCACTACTGGTGTGGTTGTAATGGCTGGTGCACTCTTAGAACAGGCCGAGCGACTATTAGAACGAGGAATTCACCCTATTCGAATTGCAGAGGGTTATGAGCTGGCCTCAAAGATAGCTGTTGACCATCTGGAGCATATTGCCCAGAAGTTTGATTTTGGAGTGACAGACTTAGAGCCTTTGGTTCAAACTTGCATGACCACTTTATCATCAAAGATTGTGAATCGCTGTAAGCGCAGTCTAGCAGAAATTGCTGTTAAAGCGGTTGTTTCTGTGGCAGATCTTGAAAGAAGGGATGTTAACTTAGACTTGATAAAAGTTGAGGGGAAAGTAGGGGGGAAGTTAGAAGATACTGAACTTGTATATGGTATTATTGTTGACAAGGACATGAGTCACCCTCAGATGCCAAAGCAAATTGAAGATGCCAAGATTGCCATATTAACTTGCCCGTTTGAACCTCCGAAACCCAAGACAAAGCATAAGGTTGATATTGATACAGTGGAGAAGTTCCAGACGTTGAGACTACAAGAACAGAAGTACTTTGACGACATGGTGCAAAAATGCAAGGATGTTGGCGCTACATTGGTTATTTGTCAATGGGGGTTTGATGATGAGGCAAATCATCTGCTGCTGCACCGAAATTTGCCAGCTGTGAGATGGGTTGGTGGTGTGGAACTAGAGTTGATAGCAATAGCCACAGGTGGGAGAATAGTCCCTAGGTTCCAGGAATTGACTTCAGAGAAACTTGGGAAGGCTGGTTTGGTTCGAGAAAAATCATTTGGTACAACAAAAGATCGGATGATATACATTGAACATTGTGCAAATTCAAGGGCTGTGACCATTTTTATCCGTGGAGGTAACAAAATGATGATAGAGGAGACAAAACGCAGTATCCACGATGCTTTATGTGTGGCTAGGAATCTCATCCGCAATAACTCTATTGTGTATGGCGGTGGTTCAGCTGAGATTTCTTGTTCAGTTGCTGTTGAGGCTGCTGCTGATAAATACCCTGGAGTTGAGCAGTATGCTATTAGGGCATTTGCTGATGCCCTGGATTCTGTTCCAATGGCTCTTGCGGAGAATAGTGGTTTACAACCAATCGAAACACTTTCTGCTGTAAAATCTCAGCAAATTAAGGAGTACAATCCATATTGTGGAATAGACTGCAATGATATTGGCACAAATGACATGCGGGAGCAAAATGTATTTGAGACTTTGATTGGTAAGCAACAGCAGATTTTATTGGCAACTCAGGTGGTGAAGATGATCCTGAAGATTGATGATGTCATTTCTCCTTTAGAATATTAA 1608 43.28 MALAFDEFGRPFIILKEQEQKTRLRGLDAQKANIASGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRIAEGYELASKIAVDHLEHIAQKFDFGVTDLEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVVSVADLERRDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRLQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLLHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTSEKLGKAGLVREKSFGTTKDRMIYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGSAEISCSVAVEAAADKYPGVEQYAIRAFADALDSVPMALAENSGLQPIETLSAVKSQQIKEYNPYCGIDCNDIGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPLEY 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 218821 225041 + CmaCh05G000550.1 Cma05g00055 294173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00055 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma05g00055 535 Gene3D - 38 530 IPR027413 -
Cma05g00055 535 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Cma05g00055 535 SUPERFAMILY GroEL-intermediate domain like 156 412 IPR027410 -
Cma05g00055 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Cma05g00055 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Cma05g00055 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Cma05g00055 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Cma05g00055 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Cma05g00055 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
Cma05g00055 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Cma05g00055 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma05g00055 535 PANTHER BNAA08G19100D PROTEIN 5 532 - -
Cma05g00055 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma05g00055 535 Gene3D GroEL 222 376 IPR027409 -
Cma05g00055 535 Gene3D - 150 412 IPR027410 -
Cma05g00055 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Cma05g00055 535 PANTHER CHAPERONIN 5 532 IPR017998 GO:0140662
Cma05g00055 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00055 K09497 CCT5; T-complex protein 1 subunit epsilon - csv:101205103 1021.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00651 Cma-Chr2:3944768 Cma05g00055 Cma-Chr5:218821 3.20E-90 dispersed
Cma05g00055 Cma-Chr5:218821 Cma13g00071 Cma-Chr13:561448 2.14E-86 dispersed
Cma18g00056 Cma-Chr18:241922 Cma05g00055 Cma-Chr5:218821 1.76E-104 transposed
Cma12g00045 Cma-Chr12:168630 Cma05g00055 Cma-Chr5:218821 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g592 . . . . . Bpe10g00853 Bma14g01835 Bma15g00232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00834 Blo11g01032 Bda07g01650 . . . . . . . . . Cma05g00055 . Car05g00043 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00055 Cma_Chr05 FPKM 60.307587 67.507477 61.25042 66.78051 54.486927 57.101414 55.861927 137.084839 137.748779 145.328735