Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00056 ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACCCTTCTTCTCCAAATGTGCTCCATTTCATCTTCTCCAGTAGCCGACCCTGAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGACTGTTGGCGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGCAAATTCTACGTAGTCACCGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGCGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGAGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCCGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTGATTGATGCGATTCATGGGTCTACGGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTAATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTCCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAATAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGTGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACTGCAGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG 1221 49.55 MEIPSFLPIITFTLLLQMCSISSSPVADPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 225612 227514 - CmaCh05G000560.1 Cma05g00056 294174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00056 406 PANTHER PECTATE LYASE 10 403 - -
Cma05g00056 406 SUPERFAMILY Pectin lyase-like 43 400 IPR011050 -
Cma05g00056 406 Gene3D - 57 399 IPR012334 -
Cma05g00056 406 Pfam Pectate lyase 165 321 IPR002022 -
Cma05g00056 406 PANTHER PECTATE LYASE 18-RELATED 10 403 IPR045032 GO:0030570
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Cma05g00056 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Cma05g00056 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00056 Cma-Chr5:225612 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma12g00046 Cma-Chr12:173505 Cma05g00056 Cma-Chr5:225612 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00056 K01728 - csv:101208076 735.717