Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00057 ATGGTTTCCGTCTCATTTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCGAACCGTGTTCCGACCTCAAATCCTCTATTTCATGGAGTCCAATTCCGAGGTTTATCCCACCATAAGCCTTTCCTTCGTGGTTCCCTTGCGGTGGCGAGATTTGGGTTTACACCCGAGTTCTTGCCTGACCCGGATCACGCCGAGGGCTTTTTGAGGGAGTTATTCGGCAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCTCCGGAGGATGTTACCACCGCCAAACAGACCGAGGATTGGTTTACGGGGATCACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGCCTTTCTGCTGTACATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACAGTTCTTGTTAAGGCTGCTACGTTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCGCAAGTGAAGGCTGTTCAGCAACGCTACGCTGGGGATCAGGAGAGGATTCAAGTTGAGACCGCTCGACTGTACAAATTAGCTGGCATAAACCCACTGGCAGGATGCCTACCCACATTGGCAACAATTCCTGTATGGATTGGACTATACAGAGCTCTCTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACCACGATTGCTTCTCGACAAAATGGGAGCGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCGCTTGGGTGGTCAGATACTTTTGCGTATCTTGTCCTGCCTGTGTTGCTGGTCGTCTCACAGTACATCTCTGTTCAAATTATGCAATCGTCGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGCCCTATCGAAGTTCCTACCGTTAATGATCGGATATTTTGCACTTTCGGTTCCTTCTGGTCTAAGCCTTTACTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCGTGGCTTCAAAAGTTAGGTGGTGCGAAAACCCCGGACAAACGATTGATTGATGAAATCATGAAACAAGAACAACCCCAAATCCAGAGCCAAGCGCCCAAGTTAGACTCAACCTCAAGTAGCACGGTAACTCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATGAGACAGCAAAGTGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCCAAGGTTGAATCTCTGACAATAAATGATAGCGACAAGAGTGCAGTTGTTGGAGTTGGTGTCAATGGCAGTCTTTCTAGAACGGATGTAAAGGAAGACCAAGGCTCCATATCTATGACTACCATGCAACGAACAGATGTGGAAAACAAGCCAAGTGCAACTCCAGAGGAGGGAGTACACGAGACATACACTGGAGTGGCCAAGGATGCCAAACTAAAGGGAGAAGAACAAAGAGAGTAA 1515 47.13 MVSVSFYRPNFVFSSFPNRVPTSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFTPEFLPDPDHAEGFLRELFGKAESVLYTIADAAVSASPEDVTTAKQTEDWFTGITNYMESVLKILKDGLSAVHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQVETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQNNDPNMKSSQALSKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKTPDKRLIDEIMKQEQPQIQSQAPKLDSTSSSTVTRQEEKLTAEGLKPGERFKQIKEQEARMRQQSEEEKRKAEEAAKVESLTINDSDKSAVVGVGVNGSLSRTDVKEDQGSISMTTMQRTDVENKPSATPEEGVHETYTGVAKDAKLKGEEQRE 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 230281 234605 - CmaCh05G000570.1 Cma05g00057 294175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00057 504 MobiDBLite consensus disorder prediction 364 401 - -
Cma05g00057 504 MobiDBLite consensus disorder prediction 364 388 - -
Cma05g00057 504 MobiDBLite consensus disorder prediction 407 426 - -
Cma05g00057 504 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 345 IPR028055 -
Cma05g00057 504 MobiDBLite consensus disorder prediction 452 474 - -
Cma05g00057 504 Coils Coil 401 425 - -
Cma05g00057 504 MobiDBLite consensus disorder prediction 451 504 - -
Cma05g00057 504 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Cma05g00057 504 MobiDBLite consensus disorder prediction 487 504 - -
Cma05g00057 504 PANTHER OXA1 48 427 IPR001708 GO:0016021|GO:0032977
Cma05g00057 504 PANTHER BNAA09G28180D PROTEIN 48 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00591 Cma-Chr1:3103401 Cma05g00057 Cma-Chr5:230281 1.18E-149 dispersed
Cma05g00057 Cma-Chr5:230281 Cma16g00545 Cma-Chr16:2799600 2.43E-08 dispersed
Cma05g00057 Cma-Chr5:230281 Cma12g00046 Cma-Chr12:173505 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00057 K03217 - csv:101205346 874.004