Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00059 ATGTCGATGCTGGATTCTCCCACATGTTCCGTCGATGCTGCGGCGTCTCACAATACTGTTTTCATTGACACCAGCCTCGGCACTCACTTGGCGATGGCCGTCTCAGACGGTGATATCGTCTCTGATATCAAAAAAAAGATAGAGAAGGAACATCCACTGTGTTTTCCTCATCTCGGGACCCTAAAAATTCATGCAATTAAGGTAACGCGCAAAGGGCACTTCTATCACCTTTCTGACTCCATGTATTTGAAAAGTGCATTTGTTGGCTACAATGACTGCTGGTTTCTTTCTGTTGATGCTTCTATTGTTGATGGTCAGTCAACTGACCCTAATACTGGCAATCTTTCAACTTATTTTGAAAGGGCAGGTGATATCTCCGTTGATAGAATAAATGTTGCCAGAAATAATCATGGTGGACATTTACCTAACCATGATGCTCCACAATTACAAAACATTGTGACACAAGAATATGTCAATGAGAAAGCCCCTAGTAGAAAAGATTTAACGACTGAGAAGGAAGAAGTTACTCATTCTGTTGAAACTTGCAGCAAACATAAATCGGGCAGGATAAGGAATGGCTATGAAGGCCTCAGCGAAACACTGGAATCTTTGCCTACTATGAAGGTGAATCGTAAAAGTAAGAAGAGAAAAACAAAATTGATTACTGAACACGAAGTTGTTAATCATACCGGTGATGATAATGATCAAAACCCATTGCAGCAAGTCGTTGGATCTGGTGAAAAATCCAGGGAATATGCACATAATAAAGTTTTCGATCATCCAATGATGGAGAGAAAATCCAATGTAGGTGAACCTGGTCAGGTCTCATCTTCTAGTGCTCGTGATGAATCTGAACATGGAAGGACGCTTAAGTTTAATTTATCTGAGGAAGCTGAGGTTGATGACAAAAATTATAAATCCGAATATCTGATGGATGATACTTCTTTGGTAGGTGCTGCACAGGCTGGGTTCATTGCAAAAAAAATGCCCATGATTGAAATGACAAGTGGAGTAATGAATGGAGTGGAAGGAAACAGAGTTTTTGTTTCTGAATCTAGCAAAGCGACATCTACACCTAAGGTTACTTCCGAGTACTTGTCGGATATGAACCAAACTGCAAAAGTTGCCGTAGGTAGTTTGTCTACTGAACCTGATGATCAACTGCCCAAGACTGGTTCAAGTTATGAGAAGAAGAAGACAAGGAAAAGGAAAAGTAAGTTGTCATGTTGTCCAAATGAGGCTTTTGGTTTGATTTCATCTAGAGTAGAGGATCAACAGGATGCAAGTCGAGAATCTGATATAACAACTGTCCCCAGTCAAGATATTGAGGAGGCATCAATTCCCAACCTCCTGGGAGCATCCAGGAAAAGGCACAATGATTCAAATGATAAAATTGCAGAAATTTCTGCACCGTCCTTGGTTGGAGAGTCCTGTGATGATAAGAACAACATTGAACTTGGCGATGTGCAAAGCATAAGGAATGCGTCTGATAAAGCTGTGTTAGGAGTAAAAGGAATGATTGATTCAAAGGACATTGCCTCTAAAAGCAAGGATCCCGCTGATCTCCAGAAAAGCATTAGTACATCTGAGGATGCCAATAATGTTCGAGGCAATCATCTTACGTGCAAAACCAGAAAGGTTGTTCCAATTCTAGAGGGAAGAGAGTTTCTGCAGGTCACCGATACAAAAGCCTCAATGGTAGAGAACTGTCACTCATCAAGCTGGGATGGTACTGACGCTAACATTAAAGCTGCTGATATTTCTGAATCGGTACATTTAAAGGGAACTACTGAAAACGCCAAGCATGGTAAGAAAAGGAAGATTAAAAAATCTAGGGGTTCAGCAGAAGAAAGACAGATTAATTTAGTCACAAAAGGTGCTGGAGATACTGCACAAGACATTCTTCCAACCGAGCCACAAAGTTCTACTTTAGGTGATAATTCTTGTAGTAAAGCTGAGATTGGAGAAAACAATGTTTCTCTAATGAAGGGAGAAACCACAACTAGTACTTCCTTAATACCTGATGTTAGGAATATAGATATAGATAAACCAATTATAAGTAAGGTGGGACCTTCGATGCAAATCAACCAAACTCAAGCAGTAGCAAAAGACATGGATGGGCAAGTGAGAAAGAAAACTAAGAAGAGACCTGTGGCATCAATGAAAAGTACATCAGACCTTCAAGAAGAAAGTATCGGTAATGAGGATTCATTCCCATCAAAGAGAATTGACAAGGAAGTAAAACCTATGTCTATAGCGGCAAAGAAAACTAAGTTTCCGAAAGCAAATTTGAGGAATGAAATTGAAGATGCGAATTTGGACTCTACGCTGTTTTCTGAGGTTGAAACTACTCCTAGCATTTGCAAGAAGTCTAAGACAGTTGGGCCCTCCCTCACTCCATCTCTCGTTTCTGAAGGCTATGAAGAGAGGCCTATTGAAGCAAATAGATGTAGCAACACCACTAAAGATGGTACTACTGATAATGTTGACAATCACGATGAAGTTCCTTATAAAAGCGATAAAGTTGGCATTGAGGAAAAGGCTGTCGAACTCCAACACGAATCCGTTGAAGTGCATGTCGACAAGTTGAGTAGAGAGAAAAGTCCAGATACTTCGCTCAAATCTAAAAGAAAAAAGAAAAGTCTAAGTGTCTGCTCTTCTGCGGTCTCCTTGAGTACGCAGAACAAACAGAAGTCAGATGAAAACACAGAGACTGAGGAACATTGGCAAACTAGCAACTCTAGCGCCCTCAAACTTCATGTTGACAATAAGCTAAAGAAAAATTCAAGAGGTGGGGTAAATTCTCTGCCTTCTAATGAGCATAAGCAGCAAACCTCTGACTCTAATAAAGCAGCTAGGGTGAGGGAAAAAGTTGTCGATTCTTCTCGGGGCAGTACTGAAATATACAGTGAGACTCCTGCTTTACCAAAAGCAAGACCCAAGTCGAAAAACTCAGCAAATATGGCTCAACAGGACCAAAAGCATAGGGGAAGTCAATCTACTGTTATTGGCCATCCTCTGGGTGAACAAAAACCTTCTCGGAGTGGGAAGCAAGATGATACTCAATCACAACGAAAGAACTTGTTGCTTACATCAGGAGGCATATTTAAGGATGCTAGCAGTGATAGTTCTGAGGATGAAGGTGGAATTGCTGATTCAGATGCTAGATCTCCTGATAATTCACTAATATCCAACTTCTCAGACGGTGAAAGCAATGGATCTGTTGACTTGGAAAGAACAAACACCCGTAGAAGTATGAGAAAGAAAGAGCCTTCAAGCCCTGAGAATATGACCCTCGACATAATCCTTCGAAGTTCAAGTAGGTATAAGAAGGCAAAGCTCACAGCTGTGCAATCACTACAAGATGATACTGAAAGCCAGCCTGTCGATTTTGTTCCAGACAGTCAGCCTAATATTTAG 3420 40.79 MSMLDSPTCSVDAAASHNTVFIDTSLGTHLAMAVSDGDIVSDIKKKIEKEHPLCFPHLGTLKIHAIKVTRKGHFYHLSDSMYLKSAFVGYNDCWFLSVDASIVDGQSTDPNTGNLSTYFERAGDISVDRINVARNNHGGHLPNHDAPQLQNIVTQEYVNEKAPSRKDLTTEKEEVTHSVETCSKHKSGRIRNGYEGLSETLESLPTMKVNRKSKKRKTKLITEHEVVNHTGDDNDQNPLQQVVGSGEKSREYAHNKVFDHPMMERKSNVGEPGQVSSSSARDESEHGRTLKFNLSEEAEVDDKNYKSEYLMDDTSLVGAAQAGFIAKKMPMIEMTSGVMNGVEGNRVFVSESSKATSTPKVTSEYLSDMNQTAKVAVGSLSTEPDDQLPKTGSSYEKKKTRKRKSKLSCCPNEAFGLISSRVEDQQDASRESDITTVPSQDIEEASIPNLLGASRKRHNDSNDKIAEISAPSLVGESCDDKNNIELGDVQSIRNASDKAVLGVKGMIDSKDIASKSKDPADLQKSISTSEDANNVRGNHLTCKTRKVVPILEGREFLQVTDTKASMVENCHSSSWDGTDANIKAADISESVHLKGTTENAKHGKKRKIKKSRGSAEERQINLVTKGAGDTAQDILPTEPQSSTLGDNSCSKAEIGENNVSLMKGETTTSTSLIPDVRNIDIDKPIISKVGPSMQINQTQAVAKDMDGQVRKKTKKRPVASMKSTSDLQEESIGNEDSFPSKRIDKEVKPMSIAAKKTKFPKANLRNEIEDANLDSTLFSEVETTPSICKKSKTVGPSLTPSLVSEGYEERPIEANRCSNTTKDGTTDNVDNHDEVPYKSDKVGIEEKAVELQHESVEVHVDKLSREKSPDTSLKSKRKKKSLSVCSSAVSLSTQNKQKSDENTETEEHWQTSNSSALKLHVDNKLKKNSRGGVNSLPSNEHKQQTSDSNKAARVREKVVDSSRGSTEIYSETPALPKARPKSKNSANMAQQDQKHRGSQSTVIGHPLGEQKPSRSGKQDDTQSQRKNLLLTSGGIFKDASSDSSEDEGGIADSDARSPDNSLISNFSDGESNGSVDLERTNTRRSMRKKEPSSPENMTLDIILRSSSRYKKAKLTAVQSLQDDTESQPVDFVPDSQPNI 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 236463 241742 - CmaCh05G000590.1 Cma05g00059 294177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00059 1139 MobiDBLite consensus disorder prediction 1118 1139 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 720 734 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 789 836 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 946 962 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 262 293 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 634 651 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 928 945 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 1080 1094 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 1057 1079 - -
Cma05g00059 1139 PANTHER - 16 108 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 700 740 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 882 898 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 379 404 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 420 458 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 855 1101 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 855 877 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 595 651 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 1022 1039 - -
Cma05g00059 1139 MobiDBLite consensus disorder prediction 983 1006 - -
Cma05g00059 1139 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 16 108 IPR039218 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00059 - - - csv:101207835 1431.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01071 Cma-Chr1:7912403 Cma05g00059 Cma-Chr5:236463 1.75E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1102 Cone19ag1090 . . . . . . . . . . . . . . . . . . Cma05g00059 . Car05g00049 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010056 0 4 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00059 Cma_Chr05 FPKM 5.990856 6.43418 7.286539 6.909814 6.050276 4.994547 6.099702 14.971905 13.260439 14.019928