Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00062 ATGTATTATCGGGTAGCGAGGTCTTCTTGTAAGGATTCTCTGAAGGTCTTGGAAGAAGATATAGAACGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACACGGTTCCTATCTCCAAATGAAGCTGGTTTACAATCAATTGGCTCCTCTCCTTCTGTTTTTGATGCAATGGGTGGATTGTTCATGCACTTGTGTACTTCCCAGATACTTAAATTTCTTCCACATACTTGTTTACAAGGTTTATACAGATGGAAGGCCAAACATATCAGCTCATGGAAGAAAGGCAACTGTGAAGGATTTTTATGCTATCATATTGCCATCCCTTCAACGCCTCCAAGCGAGCGCGGAGGAGTTGGATAATGCTAAAGCGAAGCACGTCAAGTCGGATAACTCTAGTGAGAGAAGAGTTGAAGGAGATGGAAAACACTGGAATGGTGATTTAGAGAGAGAAGATGAGTGTGGGATTTGCCTAGAACAACCTTCCACAAAGATGGTGCTGCCAAACTGCTGCCATTCAATGTGCATCAAATGTTACCACAATTGGAACACGAGATCGGAGTCGTGCCCGTTTTGCCGGGGAAGCTTGAAGAGGATCAAATCAGAGGACTTGTGGGTGCTAACTGGAAATGAAGATGTACCACGCTTTTATCTCTACATAACCACCCTGCCCAAGGAATATCCAGATGCCCTTTTCTTGACAGTTTTGAACAACTGCCACAAACTCATTGTTCATTTTCTCCTCCCTGATCTCCACCAGAGCTCCATGGTCATGGAAAATGGCTTCTCTTCTCCTCGTAGCGATGCGTTTCCCGTCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGTTGAGAATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTTGTTTAGCAAGGGAGGCACTAAGCCTGCTTAGGGAGAGAAAAGATGGATACGATATCGTAATCAGCGACGTAAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGCGAAACAAGCCGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAACCGATACGAATGAAAGAACTTCGAAACATATGGCAGCACGTATTGCGAAAGAAGATACAAGAAGGAAGAGATATTGAAGGACATGATGTTCTTGAAGGGATCCAAATTCTAAGAAATGGATCAGATAGGTATGATGATAGCCAGTTCCTCAGAGGAGAGGAACTATTTTCACTGAGAAAAAGAAAAGATATTGATAAGCATGAAGACAGAGAGTTTTGTGACACTACTTCCACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTACACCAGAAGTTTGTCAAAGCAGTAGACCATATAGGTTTTGACAAAGTTGGGCCTAAAAAGATTCTGGATCTGATGAATGTTCCATGGCTGACTAGAGAAAATGTGGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTAGACTGCAGAAAGAAAATGACCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACCGATTCGTGTTCGAATGATCGAGACGGGAACTTCAGCCTTTGTAGCTCGTTAGCCGGGCCACAAACTGATGTGACAAACAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCTGCAGAATGATTCATCAGAACCAAAAAGAGCTGCTGCTGCTGCTAGGAGTGTTCCTGAACCAATAAAGCTTGCAGCCTTTGATCCCAGCAAGCGAACCTGTTACCCTTGGATTGATGCTCCAGAAACAAAGTTCAAACAAGAAATCAAGCCAGTTGTACATTCAGAAGGAGATTTCAGTCAGTTCCCTGCAACGGTTCTGCCGCATCACGTTCAAATCGACCAACTACAATCGATTTCGTCGATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTATGTATTCTGAGGAGTGTAGCCAACAGATGGTCCATGTAAACCTACCAAAAGTTCCAACTGATCCCAGTTCAACTACTACTACTACTACTGCTGCTGCTACTACACCATTGGGAAAGAAAAACCAGAGCTTAAATCTTAGCAGCATTTCAACTGATATAGGAAGTGGGTTACCCTTTGAATCCTTTGATGAAGACTTGCAGGGATATCTGCTTCAAGATGGGTGCTATCCAAAGAACCTTGATCATCAGCAGATCATAGAGTTTCCAGATTATGGTGATCCAGGCCTTTTCACTGAAGTTCCTGCTTACCTTTACGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 2406 43.39 MYYRVARSSCKDSLKVLEEDIERANALAAAIPRAKHGSYLQMKLVYNQLAPLLLFLMQWVDCSCTCVLPRYLNFFHILVYKVYTDGRPNISAHGRKATVKDFYAIILPSLQRLQASAEELDNAKAKHVKSDNSSERRVEGDGKHWNGDLEREDECGICLEQPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTGNEDVPRFYLYITTLPKEYPDALFLTVLNNCHKLIVHFLLPDLHQSSMVMENGFSSPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVLEGIQILRNGSDRYDDSQFLRGEELFSLRKRKDIDKHEDREFCDTTSTKKARVVWSVDLHQKFVKAVDHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSNDRDGNFSLCSSLAGPQTDVTNSSFSFSGDNFLLQNDSSEPKRAAAAARSVPEPIKLAAFDPSKRTCYPWIDAPETKFKQEIKPVVHSEGDFSQFPATVLPHHVQIDQLQSISSISSGRSATEKDIASSIESKPMYSEECSQQMVHVNLPKVPTDPSSTTTTTTAAATTPLGKKNQSLNLSSISTDIGSGLPFESFDEDLQGYLLQDGCYPKNLDHQQIIEFPDYGDPGLFTEVPAYLYDAMRFGYEYSYDPTEYYPVIDEGLFIA 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 249279 257352 + CmaCh05G000620.1 Cma05g00062 294180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00062 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 211 IPR013083 -
Cma05g00062 801 Coils Coil 110 130 - -
Cma05g00062 801 ProSiteProfiles Zinc finger RING-type profile. 155 194 IPR001841 -
Cma05g00062 801 CDD REC_typeB_ARR-like 277 391 - -
Cma05g00062 801 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Cma05g00062 801 MobiDBLite consensus disorder prediction 124 143 - -
Cma05g00062 801 Pfam Myb-like DNA-binding domain 458 508 IPR001005 -
Cma05g00062 801 Pfam Response regulator receiver domain 277 386 IPR001789 GO:0000160
Cma05g00062 801 SMART ring_2 155 193 IPR001841 -
Cma05g00062 801 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 260 754 - -
Cma05g00062 801 SUPERFAMILY CheY-like 274 399 IPR011006 -
Cma05g00062 801 Coils Coil 7 27 - -
Cma05g00062 801 Gene3D - 275 437 - -
Cma05g00062 801 ProSiteProfiles Response regulatory domain profile. 276 391 IPR001789 GO:0000160
Cma05g00062 801 PANTHER TWO-COMPONENT RESPONSE REGULATOR 260 754 IPR045279 GO:0009736
Cma05g00062 801 SUPERFAMILY RING/U-box 146 200 - -
Cma05g00062 801 SUPERFAMILY Homeodomain-like 454 513 IPR009057 -
Cma05g00062 801 Gene3D - 452 515 - -
Cma05g00062 801 SMART REC_2 275 387 IPR001789 GO:0000160
Cma05g00062 801 Pfam Ring finger domain 153 194 IPR001841 -
Cma05g00062 801 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 456 509 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00062 Cma-Chr5:249279 Cma12g00051 Cma-Chr12:193081 4.84E-138 dispersed
Cma12g00050 Cma-Chr12:187608 Cma05g00062 Cma-Chr5:249279 0 transposed
Cma18g00725 Cma-Chr18:6558630 Cma05g00062 Cma-Chr5:249279 1.54E-103 wgd
Cma04g01805 Cma-Chr4:9099762 Cma05g00062 Cma-Chr5:249279 4.88E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35008 PF00072 Response_reg 2.00E-24 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00062 - K14491 csv:101204370 862.833