Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00062 | ATGTATTATCGGGTAGCGAGGTCTTCTTGTAAGGATTCTCTGAAGGTCTTGGAAGAAGATATAGAACGCGCCAATGCTCTGGCTGCTGCAATTCCAAGAGCCAAACACGGTTCCTATCTCCAAATGAAGCTGGTTTACAATCAATTGGCTCCTCTCCTTCTGTTTTTGATGCAATGGGTGGATTGTTCATGCACTTGTGTACTTCCCAGATACTTAAATTTCTTCCACATACTTGTTTACAAGGTTTATACAGATGGAAGGCCAAACATATCAGCTCATGGAAGAAAGGCAACTGTGAAGGATTTTTATGCTATCATATTGCCATCCCTTCAACGCCTCCAAGCGAGCGCGGAGGAGTTGGATAATGCTAAAGCGAAGCACGTCAAGTCGGATAACTCTAGTGAGAGAAGAGTTGAAGGAGATGGAAAACACTGGAATGGTGATTTAGAGAGAGAAGATGAGTGTGGGATTTGCCTAGAACAACCTTCCACAAAGATGGTGCTGCCAAACTGCTGCCATTCAATGTGCATCAAATGTTACCACAATTGGAACACGAGATCGGAGTCGTGCCCGTTTTGCCGGGGAAGCTTGAAGAGGATCAAATCAGAGGACTTGTGGGTGCTAACTGGAAATGAAGATGTACCACGCTTTTATCTCTACATAACCACCCTGCCCAAGGAATATCCAGATGCCCTTTTCTTGACAGTTTTGAACAACTGCCACAAACTCATTGTTCATTTTCTCCTCCCTGATCTCCACCAGAGCTCCATGGTCATGGAAAATGGCTTCTCTTCTCCTCGTAGCGATGCGTTTCCCGTCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGTTGAGAATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTTGTTTAGCAAGGGAGGCACTAAGCCTGCTTAGGGAGAGAAAAGATGGATACGATATCGTAATCAGCGACGTAAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGACGGCGAAACAAGCCGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAACCGATACGAATGAAAGAACTTCGAAACATATGGCAGCACGTATTGCGAAAGAAGATACAAGAAGGAAGAGATATTGAAGGACATGATGTTCTTGAAGGGATCCAAATTCTAAGAAATGGATCAGATAGGTATGATGATAGCCAGTTCCTCAGAGGAGAGGAACTATTTTCACTGAGAAAAAGAAAAGATATTGATAAGCATGAAGACAGAGAGTTTTGTGACACTACTTCCACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTACACCAGAAGTTTGTCAAAGCAGTAGACCATATAGGTTTTGACAAAGTTGGGCCTAAAAAGATTCTGGATCTGATGAATGTTCCATGGCTGACTAGAGAAAATGTGGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTAGACTGCAGAAAGAAAATGACCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACCGATTCGTGTTCGAATGATCGAGACGGGAACTTCAGCCTTTGTAGCTCGTTAGCCGGGCCACAAACTGATGTGACAAACAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCTGCAGAATGATTCATCAGAACCAAAAAGAGCTGCTGCTGCTGCTAGGAGTGTTCCTGAACCAATAAAGCTTGCAGCCTTTGATCCCAGCAAGCGAACCTGTTACCCTTGGATTGATGCTCCAGAAACAAAGTTCAAACAAGAAATCAAGCCAGTTGTACATTCAGAAGGAGATTTCAGTCAGTTCCCTGCAACGGTTCTGCCGCATCACGTTCAAATCGACCAACTACAATCGATTTCGTCGATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTATGTATTCTGAGGAGTGTAGCCAACAGATGGTCCATGTAAACCTACCAAAAGTTCCAACTGATCCCAGTTCAACTACTACTACTACTACTGCTGCTGCTACTACACCATTGGGAAAGAAAAACCAGAGCTTAAATCTTAGCAGCATTTCAACTGATATAGGAAGTGGGTTACCCTTTGAATCCTTTGATGAAGACTTGCAGGGATATCTGCTTCAAGATGGGTGCTATCCAAAGAACCTTGATCATCAGCAGATCATAGAGTTTCCAGATTATGGTGATCCAGGCCTTTTCACTGAAGTTCCTGCTTACCTTTACGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA | 2406 | 43.39 | MYYRVARSSCKDSLKVLEEDIERANALAAAIPRAKHGSYLQMKLVYNQLAPLLLFLMQWVDCSCTCVLPRYLNFFHILVYKVYTDGRPNISAHGRKATVKDFYAIILPSLQRLQASAEELDNAKAKHVKSDNSSERRVEGDGKHWNGDLEREDECGICLEQPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTGNEDVPRFYLYITTLPKEYPDALFLTVLNNCHKLIVHFLLPDLHQSSMVMENGFSSPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVLEGIQILRNGSDRYDDSQFLRGEELFSLRKRKDIDKHEDREFCDTTSTKKARVVWSVDLHQKFVKAVDHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSNDRDGNFSLCSSLAGPQTDVTNSSFSFSGDNFLLQNDSSEPKRAAAAARSVPEPIKLAAFDPSKRTCYPWIDAPETKFKQEIKPVVHSEGDFSQFPATVLPHHVQIDQLQSISSISSGRSATEKDIASSIESKPMYSEECSQQMVHVNLPKVPTDPSSTTTTTTAAATTPLGKKNQSLNLSSISTDIGSGLPFESFDEDLQGYLLQDGCYPKNLDHQQIIEFPDYGDPGLFTEVPAYLYDAMRFGYEYSYDPTEYYPVIDEGLFIA | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 249279 | 257352 | + | CmaCh05G000620.1 | Cma05g00062 | 294180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00062 | 801 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 211 | IPR013083 | - | |
Cma05g00062 | 801 | Coils | Coil | 110 | 130 | - | - | |
Cma05g00062 | 801 | ProSiteProfiles | Zinc finger RING-type profile. | 155 | 194 | IPR001841 | - | |
Cma05g00062 | 801 | CDD | REC_typeB_ARR-like | 277 | 391 | - | - | |
Cma05g00062 | 801 | ProSitePatterns | Zinc finger RING-type signature. | 171 | 180 | IPR017907 | - | |
Cma05g00062 | 801 | MobiDBLite | consensus disorder prediction | 124 | 143 | - | - | |
Cma05g00062 | 801 | Pfam | Myb-like DNA-binding domain | 458 | 508 | IPR001005 | - | |
Cma05g00062 | 801 | Pfam | Response regulator receiver domain | 277 | 386 | IPR001789 | GO:0000160 | |
Cma05g00062 | 801 | SMART | ring_2 | 155 | 193 | IPR001841 | - | |
Cma05g00062 | 801 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR11 | 260 | 754 | - | - | |
Cma05g00062 | 801 | SUPERFAMILY | CheY-like | 274 | 399 | IPR011006 | - | |
Cma05g00062 | 801 | Coils | Coil | 7 | 27 | - | - | |
Cma05g00062 | 801 | Gene3D | - | 275 | 437 | - | - | |
Cma05g00062 | 801 | ProSiteProfiles | Response regulatory domain profile. | 276 | 391 | IPR001789 | GO:0000160 | |
Cma05g00062 | 801 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 260 | 754 | IPR045279 | GO:0009736 | |
Cma05g00062 | 801 | SUPERFAMILY | RING/U-box | 146 | 200 | - | - | |
Cma05g00062 | 801 | SUPERFAMILY | Homeodomain-like | 454 | 513 | IPR009057 | - | |
Cma05g00062 | 801 | Gene3D | - | 452 | 515 | - | - | |
Cma05g00062 | 801 | SMART | REC_2 | 275 | 387 | IPR001789 | GO:0000160 | |
Cma05g00062 | 801 | Pfam | Ring finger domain | 153 | 194 | IPR001841 | - | |
Cma05g00062 | 801 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 456 | 509 | IPR006447 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00062 | Cma-Chr5:249279 | Cma12g00051 | Cma-Chr12:193081 | 4.84E-138 | dispersed | |
Cma12g00050 | Cma-Chr12:187608 | Cma05g00062 | Cma-Chr5:249279 | 0 | transposed | |
Cma18g00725 | Cma-Chr18:6558630 | Cma05g00062 | Cma-Chr5:249279 | 1.54E-103 | wgd | |
Cma04g01805 | Cma-Chr4:9099762 | Cma05g00062 | Cma-Chr5:249279 | 4.88E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35008 | PF00072 | Response_reg | 2.00E-24 | CL0304 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00062 | - | K14491 | csv:101204370 | 862.833 |