Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00068 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCACTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCTGATAAAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAGCTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGAGAGGCACCTGGAAATGATGGGGAGAGTCAAGCATTTGGCGGGAGAGTAATATCAGTGAAGTGGGGGGACTACACAAGAAGAATCGGTATTGATGGCACCTCAGAGGCCATCAAAGAGGCAATCAAATCTGCATTCAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTGAAAATCTGCCTCTATGATGAATCTGATCACTTACCGGTACATACCGAAGAAAAAATATTTTACATTGAAGAAGATTACCGAGATTTTTTAACTCGTCGGGGCTGGACATGTCTTCGGGAGTTTGATGGGTATAGAAACATCGATACTATGGATGATCTTCGTCCTGGTGCAATATACCGCGGAAGTAATGGAAAATGA 1140 46.58 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGTAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKGIEDNGLTFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNDGESQAFGGRVISVKWGDYTRRIGIDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYIEEDYRDFLTRRGWTCLREFDGYRNIDTMDDLRPGAIYRGSNGK 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 288554 293948 + CmaCh05G000680.1 Cma05g00068 294186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00068 379 MobiDBLite consensus disorder prediction 34 65 - -
Cma05g00068 379 PANTHER - 5 375 - -
Cma05g00068 379 MobiDBLite consensus disorder prediction 34 50 - -
Cma05g00068 379 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
Cma05g00068 379 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Cma05g00068 379 SMART sant 65 127 IPR001005 -
Cma05g00068 379 MobiDBLite consensus disorder prediction 51 65 - -
Cma05g00068 379 CDD GT1 67 132 - -
Cma05g00068 379 Gene3D - 69 131 - -
Cma05g00068 379 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00068 Cma-Chr5:288554 Cma14g00061 Cma-Chr14:265014 5.05E-13 dispersed
Cma12g00058 Cma-Chr12:207686 Cma05g00068 Cma-Chr5:288554 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35009 PF13837 Myb_DNA-bind_4 4.40E-21 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00068 - - csv:101222888 703.36