Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00083 ATGGATATTACTGAGGTTGAAGAAAATTTATTTGCTGCGAGTGATGCCAAGCTACACGGGGGAATGTGCAAGACTCTTTCTGCAATATATTGTGAAGTGTTATCAATTTTCCCTTCATTGGAAGCGGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCACTGCATGTAGCACTGGAAAAAGCTAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGAGCTCTGCAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGAAGTACTCATTTTTTCCTAGATCCCTTGGAGAAGCAAGTTGGCGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAGCAACACTGTTGACAACGATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAACAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGTATTGAAGAGGACAAAAGGAAGGAATCCATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGTGAGGTATCAGACGACAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTCGAGGACAGTGGACCTGGTGGAAACGGTCAGGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTATTTTGAAGCCAAAAAATCGCAGATTTGAGCCGAGTCCCCTTCCACCTGACGAGTTGAGGTGCCATATTTCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTTAGTGATGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTACATTGACTCCGAATTACAGTGTTAAGGGCCTGATTACAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATGGACCTCCAGATAGTCTTGACCTAAATTACTGGAGGCTCGCGTTATCTGAATCAGAGTCTCAATTGTCACATATGGAGTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGCAGAAAATAGTATAACTGAGGAGATCCAAGGAAATGTAATGGACGACAAATCTGCTGAAGATCAAAAGTCCGACATAAATATGCATGCTAAATACGAAGAGTATTTGAAAGTCTTAAATGAAGAAGCTGACTTGAGGAAAAAGTCGGCGGTTGTGGAGCAAATGAGACAGTTGCTCAAGGAGGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGATTCGTCCAGGGACTTCTACGCTACTTAGAGATGGCCATGCGAGAACAAAATACTAGGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAAGAAATAATGCTGGCGGCAGGGATGATGCCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTACTTGATTCAGCCCCTCCACGCTAGTACCCAAACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATACCCAACCTGATTTCTTCTGAAATCATCGGGGGACTTCAAGCCCTTCTTGCAGCCCGTCTTGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATATAGCTTCAAGTGAATTAGGTAGAGATCAAATGTCATCCACTCCAGAAATTATCAGTGGGTTGGCAGCAATATTAGACAGTGGTGAAGCCCTTGAGCAGGAACAAGCAGTGACTTGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATGTCTGTGAACGGGACAACGAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACAGGAGCCGCCACCGCCACGGCCACCTGCATCCATACCGAAACCACTATCAGAGAGTAGCGGGACATCCATGCCTGTGGCTGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGAAAAACAGGAAAAGCTTTTGGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATTCTGA 2319 43.98 MDITEVEENLFAASDAKLHGGMCKTLSAIYCEVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKRALQDSLKRVEDIVPQSIGYQVQEIMKELGSTHFFLDPLEKQVGDDIILLLQQGRTFSNTVDNDELEAFHQAAIRLGINSSRTALAERRALKKLIDRSRIEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQGSLEDSGPGGNGQAFERQLTKIGSFILKPKNRRFEPSPLPPDELRCHISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTQQKLSHLTLTPNYSVKGLITNWCEQHGVPVPDGPPDSLDLNYWRLALSESESQLSHMESVGSCKLKDVKVVPLAENSITEEIQGNVMDDKSAEDQKSDINMHAKYEEYLKVLNEEADLRKKSAVVEQMRQLLKEDEEARIFMGANGFVQGLLRYLEMAMREQNTRAQESGAMALFNLAVNNDRNKEIMLAAGMMPLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPYLIQPLHASTQTLCKLDALHTLYNLSTVPSNIPNLISSEIIGGLQALLAARLDRTWTEKCIAILINIASSELGRDQMSSTPEIISGLAAILDSGEALEQEQAVTCLLILCNGNEKCSEMVLQEGVIPGLVSMSVNGTTRGKEKAQKLLMLFREQRQQEPPPPRPPASIPKPLSESSGTSMPVAESKPLCKSISRRKTGKAFGFLWKSKSYSVYQF 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 352529 357860 - CmaCh05G000830.1 Cma05g00083 294201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00083 772 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cma05g00083 772 PANTHER U BOX DOMAIN-CONTAINING 1 718 - -
Cma05g00083 772 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cma05g00083 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cma05g00083 772 MobiDBLite consensus disorder prediction 222 253 - -
Cma05g00083 772 MobiDBLite consensus disorder prediction 224 246 - -
Cma05g00083 772 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cma05g00083 772 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 718 - -
Cma05g00083 772 SUPERFAMILY RING/U-box 279 355 - -
Cma05g00083 772 Gene3D - 399 715 IPR011989 -
Cma05g00083 772 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cma05g00083 772 SUPERFAMILY ARM repeat 432 709 IPR016024 -
Cma05g00083 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
Cma05g00083 772 MobiDBLite consensus disorder prediction 711 745 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00755 Cma-Chr4:3847267 Cma05g00083 Cma-Chr5:352529 2.73E-83 dispersed
Cma05g00083 Cma-Chr5:352529 Cma16g00618 Cma-Chr16:3193789 2.08E-88 dispersed
Cma12g00066 Cma-Chr12:239998 Cma05g00083 Cma-Chr5:352529 0 wgd
Cma18g00710 Cma-Chr18:6460697 Cma05g00083 Cma-Chr5:352529 0 wgd
Cma04g01823 Cma-Chr4:9191434 Cma05g00083 Cma-Chr5:352529 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00083 - - csv:101220593 1301.58