Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00093 ATGAATATTCACAGGGATTTCAGCGGAATCGTCGCCGGAGTTGACGCGGACTACAAAAACCTCAATCTTCCGACGATGCAGGCTTGCGCTGCGTGCAAATTTCAGAGACGAAAATGCACTGCGGATTGTCCTCTGGCTCCGTATTTTCCTGCAGATCGGTTTCGGGAGTTTCGAAATGTCCGCAAATTGTTCGGCGTAAAGAACGTGTTGAAAACCCTAGGCGATTTGGAGCCTTCGAAGAGACGTGATGCAGTGCAGTGTATAATTTTCGAGGCCAATTGTCGCGCCAATGATCTCGCCGGAGGTTGCTACAAAATTATTGCTAAAATGCAGCGTGAAATTACTCTTCTGGAGGCTCAGCACCGTCTCGTCCTCCGTCAGCTTCGATTTTTCCGGCAGACGGCTGCGTGTGCGATTCGTTCGGAATTTGATTTTGATTTTGATTTTGAAGATCGGATACGAAAAGAATCCTGCAGTTTGAATGAGCGGTTGACGACTATGGAGAATGGCGTTTCTTGTTCCAAAGGGTTTGTTCCGCTGCGTGTGCCCTCCATTTCCTTCCATTATGTCGACACTCTTCTCTCATGCCTCCTCTTCCTTCCTTCCCACTTCTCCACTTCCTCTTCCTTCTCTCTCTTTCTTTTTCTTCCCCTTTTTCTCTCTTTTTCGTCGCCGACCGCCCGCTGTCGCTGCTTTATTTTGAAAGCCAAACGAACCCTTCTCCTCGCCGAACGCCGCATCAATCACTCCTCTTCGCCTGATTCCATTTCAGCCACTTTTCCCATTCCGAAGATTCCAGATTTGGGTTCTTCACAGTCACTGGCTCTTCTTAATTCCTTGCTCAAACTTTCTTCTTCTCTCATGTTCTTCCTCGAGGATTTGTGGCAGATTCTCTGTGTTCAAGGTTTCCAGGATAAAGCTCGAGTTCTCTCCGAGTCTCTTCTCCGGACCGTATCCGAATCCATGGGCAATTCGGATTGTGGCGTCTCGGAGTTAGAACTCTGTAGAGACGATTCGGCTGCGTTCCATTTCAAATTAATCGCCATCGCCTCCATTCTCACATCGGGAGTCATCGGAATCGCCATTCCATTGTTTGGCAGCCAGCGCCGGTTTCTCAAAACAGACGGAAATCTGTTCGTCGCGGCGAAGGCGTTTGCCGCCGGTGTAATTCTTGCCACCGCTTTTGTGCACATGCTTCCGGACGGATCGAATGCCCTCTCCGATCCGTGCTTGCCGAAATTCCCATGGTCGAAATTTCCTTTCTCGGGATTCTTCGCGATGATGGCGTCGCTGTTGACGCTCCTCGTCGATTTCGTCGGGACTCAGTACTACGAGCGAAAACAGGGGGTGATTCGATCGAAAGAGGAGGAGAACCGGGTCGGGTCGGTGGTAGATTCCGGGTTGGAATCGGGCATTCTTCCCGCCGGAGATTTGAACGTGAAATTGTTCGGGGAAGAAGACGGCGGCGCGATGCACATCGTTGGAATGCATGCCCACGCCGGCCACCATCGTCCCAGTCATCCGCAGGGGAAGGAGGCATGTGATGGGCACGTGAGAGTCCACGATCATGGTCATGCCCATGGAGGACATGGTCATTCTCATGGGCTTGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTATTTCCCAGATTTTGGAGCTCGGGATAGTGTCACATTCAGTGATAATTGGACTGTCTCTGGGAGTGTCCCACAGCCCATGCACCATTAGACCCTTAATTGCAGCCCTGTCCTTCCATCAGTTCTTTGAAGGCTTTGCCCTGGGCGGCTGCATCTCTCAGGCTCAGTTCAACACCCTCTCCACCTCCCTCATGGCTGTCTTCTTCGCCATCACCACGCCCATCGGCATTGCCATAGGTGCCGCAGTCGCTTCCACCTACAACCCGAACAGCACTGGGGCGTTGATTGCAGAAGGGATTTTGGACTCTCTATCCGCGGGAATTCTGGTGTACATGGCTTTGGTTGATTTGATCGCGGCTGACTTTCTTAGCAAGAGAATGAGCTGCAATTTTAGACTCCAAATTGTTTCTTATTGTACTCTATTTCTCGGGGCGGGGCTGATGTCTTCGCTCGCTCTCTGGGCTTGA 2112 51.28 MNIHRDFSGIVAGVDADYKNLNLPTMQACAACKFQRRKCTADCPLAPYFPADRFREFRNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRANDLAGGCYKIIAKMQREITLLEAQHRLVLRQLRFFRQTAACAIRSEFDFDFDFEDRIRKESCSLNERLTTMENGVSCSKGFVPLRVPSISFHYVDTLLSCLLFLPSHFSTSSSFSLFLFLPLFLSFSSPTARCRCFILKAKRTLLLAERRINHSSSPDSISATFPIPKIPDLGSSQSLALLNSLLKLSSSLMFFLEDLWQILCVQGFQDKARVLSESLLRTVSESMGNSDCGVSELELCRDDSAAFHFKLIAIASILTSGVIGIAIPLFGSQRRFLKTDGNLFVAAKAFAAGVILATAFVHMLPDGSNALSDPCLPKFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGVIRSKEEENRVGSVVDSGLESGILPAGDLNVKLFGEEDGGAMHIVGMHAHAGHHRPSHPQGKEACDGHVRVHDHGHAHGGHGHSHGLDGDDDESGVRHVVISQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAITTPIGIAIGAAVASTYNPNSTGALIAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSSLALWA 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 397954 401850 + CmaCh05G000930.1 Cma05g00093 294211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00093 703 PANTHER ZINC/IRON TRANSPORTER 322 703 - -
Cma05g00093 703 TIGRFAM zip: ZIP zinc/iron transport family 327 703 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma05g00093 703 Pfam ZIP Zinc transporter 343 700 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma05g00093 703 Pfam Lateral organ boundaries (LOB) domain 28 122 IPR004883 -
Cma05g00093 703 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 322 703 - -
Cma05g00093 703 Coils Coil 107 127 - -
Cma05g00093 703 ProSiteProfiles LOB domain profile. 27 128 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00093 Cma-Chr5:397954 Cma11g01981 Cma-Chr11:12966451 3.10E-87 dispersed
Cma19g01119 Cma-Chr19:9194576 Cma05g00093 Cma-Chr5:397954 1.05E-46 dispersed
Cma02g00189 Cma-Chr2:863332 Cma05g00093 Cma-Chr5:397954 2.77E-23 transposed
Cma12g00640 Cma-Chr12:3405585 Cma05g00093 Cma-Chr5:397954 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35011 PF02535 Zip 5.60E-74 CL0184 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00093 K14709 - csv:101218224 704.516