Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00096 ATGTTGAAGCTATCATTCTCACCTGTCCGCATTTTCATCTTCCTCTTCGTCATCTCTTTCCTCTTCTCTGCGCGGTTGCTTCCTTCCACCGCCCTTCCCCTCTCCGACTCGGATCAGCCGCTTCTTGCTAACGCTACTCTCCAGTCCAATAACGTATCCAGTCCGAGGAACAAGGAGGGTAGTTTTGCAGACATAATTGATCGTGCTTTGGAGAATGAGTTCAAGGACAATGACCAGAATGAAGAAATTGATTCAGGAAGCTTCAACAACAGCGTAGCAGAGAAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAATGTTTTCAATTTGGACAATGATAATAGAGCTGAAGATACTCCTACATTGATTGATCGAAAGGACAATGTGTTTATCATATCTAACTTCAAGTCTAAATATCCAGTGCTACAACTAGACTTGAGATTGATCTCAGACTTGGTTATCGTAATTGTCTCTGCAACCTGTGGTGGCATTGCCTTCGCCTGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTTGTCAGTGAAATGGTGCAAGTCGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAACTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCTTGCTCCAAATTTTCCTATTTATATGCCTCAGTGGGATCACAGCCTCGTCATGTGGTGGGAGTGCTTCTGAAGGAGTTTTTGTTGGAGCATTCCTATCAATGTCCTCAACAGCAGTGGTTCTCAAGTTTTTGATGGAAAAGAACTCGACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATCTTGCAGGACTGTGCTGTTGGGTTATTGTTTGCTTTGCTTCCAGTATTGGGTGGGAATTCTGGTATTCTTCAAGGAGTGATGTCCATGAGTAAAGTGTTGGTGATCTTGGTTACTTTTTTGGTTGTTTTGTCAATTTTATCCCGTACATGTGTTCCTTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAATGAACTCTATCAATTAGCCTCAGTGGCGTTCTGCTTGCTTGTAGCGTGGTGTAGTGATAAGTTAGGGCTAAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCGGCCCTTTTTCTTGCCAGCATCGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGATATAACAACAAGACATCAGTTTTGGTTGGAATGTCACTGGCTCAGATTGGAGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCTAATCTTCATCTAGTTGAGGGGAAATTGTATCTACTGCTTATTGGGACCACAGCTCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCAGCTGTAGTGCATTTAGGCGTGCTATTGCGATGGTTCTCTCCAGATAGTCTCGTTGAGATTGGATTTAAAGGAGACATCATCCGCTCAGACAGTGTAAAGCAGCGGGCAATGTTGATAGTCCAGGGACCTCATGATTCATGA 1761 42.53 MLKLSFSPVRIFIFLFVISFLFSARLLPSTALPLSDSDQPLLANATLQSNNVSSPRNKEGSFADIIDRALENEFKDNDQNEEIDSGSFNNSVAEKQAVLETVARVKSKKNDTKEEKFQLQNVFNLDNDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFICLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVMSMSKVLVILVTFLVVLSILSRTCVPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRAMLIVQGPHDS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 411737 419123 + CmaCh05G000960.1 Cma05g00096 294214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00096 586 PANTHER K(+) EFFLUX ANTIPORTER 6 13 586 - -
Cma05g00096 586 Pfam Sodium/hydrogen exchanger family 168 537 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma05g00096 586 Gene3D - 161 544 IPR038770 -
Cma05g00096 586 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 13 586 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00096 Cma-Chr5:411737 Cma11g00684 Cma-Chr11:3318342 0 dispersed
Cma18g01197 Cma-Chr18:9499886 Cma05g00096 Cma-Chr5:411737 0 transposed
Cma12g00636 Cma-Chr12:3375519 Cma05g00096 Cma-Chr5:411737 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00096 - - csv:101217282 1009.59