Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00100 ATGTCGACTGCCTTGCAACAAATCGATCTGGGGGATGCTTGTTCGAGTCCCTCTGGTAATGCTGAGCTTCATAATCAGTTAGCAGGAGCAATTCCTGTTAATTTTTTTCAATCCACCTCTCTCACTCCAGTTAACGTTGTTTGTGAAAATACGAAAGATATAGCATTTCCAGACCGTCATTTCCAGCCATTAGAAACTTTTAGAACGTGCATCATACCCAGTACCTCTAATGCTTTAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGATGATGAGTCTTTATGTAACTTGAACAAGTGGGAAAACCAGAGGTTTAACTGTATTCAGCAACTTGCAAGGGAGAATCCAGAAAGATCAGATTTCCAGACCATATCGTCTATGGAAAATCTGAATCAAAATGGCTGGATGCCATCTAATACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTTAGTCTTGCCACATCCAATCCCGTCCTTAGCGGAGGAACCAATTTTCTGGACCAGTATTCACAGTTGACCTTTTCTGGTGCTACTCAGCCTTGCTTGAATAGCACAGAATTAGCCTCGAACCTGAACTCGTGCAACTTCAGGGACCTCTCTCTAAGTTACAGATGTGGTAGTCCTGTTCACCTCTCTCAAGCAATAGCGGGATCAAGATATCTCTCGGTCATTCAGGACGTACTTTCTCAAATTGCAAGCTATCCACTAGAAAGTTCAGAACAAGATAGGCATTTAACATCCACAGTTGGGTTTGTGCCATTCTCATCAAGTTCCCTGGATGATAATACAGTTGAATTCGGTTCTGATATAACTGGTAGATGCAGTTCACAAATTCAAATGGAGCTTCAATGGCAAAAACTATCTGGTGATGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACAGTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCCGCCACTGATTTGGACCCTCGCTTGCATACTCGTTACACTCTCCAGACAATCACTTCTGTTTATAAAAACTTGAGGGAGAAAATTACTGATTGCATTATTGCTGTGGGGATGCATTCTGACACTATGTGCACCAAGGAGAACGAGAAAACCTTCGAGGCATCATTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAGTCAATTATGGAGGCCACAGAGAGGCTTACCTGAAAAATCTGTCTCAGTTCTAAGGGCATGGATGTTTCAGAATTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGCGGATTAACCAGAAATCAGGTTTCTAATTGGTTCATCAATGCTCGTGTTCGGCTGTGGAAACCGATGATTGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTTAA 1422 41.77 MSTALQQIDLGDACSSPSGNAELHNQLAGAIPVNFFQSTSLTPVNVVCENTKDIAFPDRHFQPLETFRTCIIPSTSNALNSSFASSLICEDDESLCNLNKWENQRFNCIQQLARENPERSDFQTISSMENLNQNGWMPSNTMNSKLWNELSLSLATSNPVLSGGTNFLDQYSQLTFSGATQPCLNSTELASNLNSCNFRDLSLSYRCGSPVHLSQAIAGSRYLSVIQDVLSQIASYPLESSEQDRHLTSTVGFVPFSSSSLDDNTVEFGSDITGRCSSQIQMELQWQKLSGDAKKSHLLTLLQLIDERYSQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITDCIIAVGMHSDTMCTKENEKTFEASFIQKQWALQQLKRKDSQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 423448 425367 + CmaCh05G001000.1 Cma05g00100 294218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00100 473 SUPERFAMILY Homeodomain-like 399 467 IPR009057 -
Cma05g00100 473 Gene3D - 392 473 - -
Cma05g00100 473 Pfam Homeobox KN domain 415 454 IPR008422 GO:0003677|GO:0006355
Cma05g00100 473 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 472 - -
Cma05g00100 473 PANTHER HOMEOBOX PROTEIN ATH1 11 472 - -
Cma05g00100 473 SMART HOX_1 398 462 IPR001356 GO:0003677
Cma05g00100 473 Pfam Associated with HOX 217 354 IPR006563 -
Cma05g00100 473 SMART prehox3 211 355 IPR006563 -
Cma05g00100 473 CDD homeodomain 398 459 IPR001356 GO:0003677
Cma05g00100 473 ProSiteProfiles 'Homeobox' domain profile. 395 458 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00100 Cma12g00634 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00100 Cma-Chr5:423448 Cma06g00526 Cma-Chr6:2460707 2.98E-47 dispersed
Cma05g00100 Cma-Chr5:423448 Cma12g00634 Cma-Chr12:3359268 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35012 PF07526 POX 6.40E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00100 - - cmos:111462608 928.702