Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00103 ATGGACGCGACCTCTTCCTCTGGCGCTCTTTCTAATGTGAAGCTTCTCAGTTCCAATAAACTCAATTCGGATCACAGGGTTCCCACGCTGTTCTCCTTGCCGAAACCTCTCGTGTCTTTATCTTGCAAATCCTATAGAAATTTGCAAGTTCGTGATAAGTCTACATCTCAAGGATTAGTGGTTTCTTGTTCTAGCTCCATTAGTCACAGAGATGTGATGCAGGGGTTACACCTTTCTGGCCCCATTGAGAAGAGAAGTCGTCTTGGACAAGCATTTTGCTCGGTAGGAAGTTTCACCTGTGGTGAATATGCTTTAGAATCTCGCTCTCAGGCAGCGGAAGAGAAGGTTGGAGTTCTGCTTCTGAATCTAGGAGGGCCAGACACGCTTGATGATGTTCAGCCATTTCTGTACAATCTATTTGCAGATCCGGATATTATCCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCCAAATTAATATCTACCTTTCGTGCTCCCAAAAGCAAAGAAGGGTATGCTTCAATTGGAGGTGGCTCACCTTTGCGTAAAATAACAGATGAGCAGGCACAGGCGCTTAAAATGGCTTTGGAAGAGAAAAACACATCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGCAAATTAAGAGGGATGGCATAACAAGACTTGTGGTGCTGCCATTATATCCACAGTACTCTATTTCCACAACTGGGTCTAGTATTCGTGTTCTCCAGAAGATTTTCAGGGAAGATGCATATCTCTCAAAATTGCCTGTTTCAGTTATAAAGTCCTGGTATCAACGTGAAGGGTATATTAAGTCCATGGCTGACTTGGTTCAGGCAGAGCTGAAGAATTTTATCAATCCTCAAGAGGTCATGATTTTCTTTAGTGCACATGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCATACAAAGATCAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGCTGAAAGCCAGAGGAATTGGGAATGAGCATACTCTTGCTTATCAGAGCCGAGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGTATTAAGAGTCTCCTAGCCGTTCCTGTGAGCTTTGTGAGCGAGCACATTGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACCTGGCACTTGAATCTGGGATCGAAAACTGGGGTCGTGTGCCTGCTCTCAATTGCAAATCTTCTTTCATTTTGGATTTGGCTGATGCAGTGATCGAAGCCCTTCCATCCGCTACAGCTTTGTCGCCCCACGCAAGCTCAACAGATGCAGATGATTGTGATCCTTTCCAATATGCTATCAAATTGCTATTTGGTTCAGTCCTCGCAATAATCTTGTTACTTTCACCAAAAGCATTTCTGGCTTTTAGGAATAATTTCATTTATAGACCATAG 1485 44.18 MDATSSSGALSNVKLLSSNKLNSDHRVPTLFSLPKPLVSLSCKSYRNLQVRDKSTSQGLVVSCSSSISHRDVMQGLHLSGPIEKRSRLGQAFCSVGSFTCGEYALESRSQAAEEKVGVLLLNLGGPDTLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNTSANVYVGMRYWYPFTEEAIQQIKRDGITRLVVLPLYPQYSISTTGSSIRVLQKIFREDAYLSKLPVSVIKSWYQREGYIKSMADLVQAELKNFINPQEVMIFFSAHGVPVSYVENAGDPYKDQMEECIYLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFILDLADAVIEALPSATALSPHASSTDADDCDPFQYAIKLLFGSVLAIILLLSPKAFLAFRNNFIYRP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 438953 442395 - CmaCh05G001030.1 Cma05g00103 294221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00103 494 PANTHER FERROCHELATASE 51 490 IPR001015 GO:0004325|GO:0006783
Cma05g00103 494 CDD Ferrochelatase_N 116 278 IPR033659 -
Cma05g00103 494 Hamap Coproporphyrin III ferrochelatase [cpfC]. 114 439 IPR001015 GO:0004325|GO:0006783
Cma05g00103 494 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 51 490 - -
Cma05g00103 494 ProSitePatterns Ferrochelatase signature. 305 324 IPR019772 GO:0004325|GO:0006783
Cma05g00103 494 Gene3D - 277 420 - -
Cma05g00103 494 CDD Ferrochelatase_C 286 422 IPR033644 -
Cma05g00103 494 Pfam Ferrochelatase 115 438 IPR001015 GO:0004325|GO:0006783
Cma05g00103 494 SUPERFAMILY Chelatase 114 446 - -
Cma05g00103 494 Gene3D - 115 439 - -
Cma05g00103 494 TIGRFAM hemH: ferrochelatase 113 438 IPR001015 GO:0004325|GO:0006783
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00103 K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] - csv:101216568 837.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00103 Cma12g00630 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00671 Cma-Chr2:4077043 Cma05g00103 Cma-Chr5:438953 0 dispersed
Cma12g00630 Cma-Chr12:3341573 Cma05g00103 Cma-Chr5:438953 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00103 Cma_Chr05 FPKM 15.547945 18.107552 17.021368 18.284704 10.688382 10.847088 10.650897 13.365308 14.250816 12.988268