Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00104 ATGGCTTGCTTACACGATCACAGTTGCGAAGATCACGATTGTTCTTCTGATTGGTCTTTATACAAGCACATAGACCTTCCCAGAGTTAGTGCAAATCTCTCTCTCTCTCTCTCTCTCTCTAGCACACGAATTTTCTTCTCTGGCAATGCTTATTACGACTTCGAATCACTCAAAACTAGTTCGTATAATCATTTTTCCTGCGAGCAATTTGAAATTTCATGGTCCTGGCTTTGGATTTTAGTAATCTCCATACCCGTTAGCTGCATGAGTATATCCTGCTGTTTTTCTCAACTGCAGGTTTCTGCTTTGAATGAGGCGACTCCAGGAAGTGTGAAGACTGTATTTAAAGCTTGGGAGCATCGGTTAAATTCATCCGGGGATCACTTAGAAAGCAACGAGGGTGATCCCGAACTGATAGTTTTCATCCCTCTGAAACTTCGAAAGCGGTCATGGAAAGAACAATCTACATTTCTGATAGCATCATTTCACGATGATTTCTATGCCTATGTTAAGATCAAAAGCATAGCAATCATTGGTGGTCCAGATGGTACTAGTCCTTCAAAGATGCGAGCGTTTATCAACCGAGAAGGTATTGACTTCTCTGATGCTCAAAGTATGCAAGCTGTTCAGGAGTGGGATTTGGCTGAGAATTTGCAAGGAGTATTAGAGTACCAGACAAGATATTCCAAATTTCAAAGTGTGGCAAATATTACTTTGCATTTTCCTGACAATTATGGCGGTGACACGTCTCAGATACACTACATTGGGTTGAAAGGTGAAGCCACACAGCTAAAGAGAGATGTTGTTGCAACTATTGTTTATGAAATTACGCCAAATCCTTCTGACCACAAGACTCGAGCTGAAGGTGGTGCGGGATTTTCACATGTTGAATGA 894 41.39 MACLHDHSCEDHDCSSDWSLYKHIDLPRVSANLSLSLSLSSTRIFFSGNAYYDFESLKTSSYNHFSCEQFEISWSWLWILVISIPVSCMSISCCFSQLQVSALNEATPGSVKTVFKAWEHRLNSSGDHLESNEGDPELIVFIPLKLRKRSWKEQSTFLIASFHDDFYAYVKIKSIAIIGGPDGTSPSKMRAFINREGIDFSDAQSMQAVQEWDLAENLQGVLEYQTRYSKFQSVANITLHFPDNYGGDTSQIHYIGLKGEATQLKRDVVATIVYEITPNPSDHKTRAEGGAGFSHVE 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 443182 447142 - CmaCh05G001040.1 Cma05g00104 294222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00104 297 ProSiteProfiles PITH domain profile. 80 277 IPR010400 -
Cma05g00104 297 PANTHER PITH DOMAIN-CONTAINING PROTEIN 1 99 145 - -
Cma05g00104 297 Gene3D PITH domain 87 270 IPR037047 -
Cma05g00104 297 SUPERFAMILY Galactose-binding domain-like 162 260 IPR008979 -
Cma05g00104 297 PANTHER AD039 HT014 THIOREDOXIN FAMILY TRP26 166 288 IPR045099 -
Cma05g00104 297 PANTHER PITH DOMAIN-CONTAINING PROTEIN 1 166 288 - -
Cma05g00104 297 Pfam PITH domain 99 260 IPR010400 -
Cma05g00104 297 PANTHER AD039 HT014 THIOREDOXIN FAMILY TRP26 99 145 IPR045099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00104 - - - csv:101216321 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00104 Cma-Chr5:443182 Cma05g01194 Cma-Chr5:9242801 3.72E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g57 . . . . . . . . . . . Cma05g00104 . . Sed08g1758 . . Bhi04g00493 Tan02g1651 Cmetu03g0683 . Hepe08g1380 . Lcy13g2175 . . . . . . . . . . . . . . . Blo17g00294 . . Bda13g01609 Bpe14g00256 . . . . . . . . . Car05g00090 Cpe11g00084 . . . . . . . . . . . . . . . Lsi08g01573 Csa02g01848 Chy03g01636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011268 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00104 Cma_Chr05 FPKM 16.007383 15.924211 29.667517 29.604767 16.788227 16.135738 19.305359 19.227468 23.517111 25.502386