Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00108 ATGGGGGAACCGTCAATCGGAGCTCCCTTGCTCTCCGCCGCCGATTTCTTCTCCGGTTTTGGATTCTTAACCGGAATCTCCTTCCCGACGGCGGAGACTTGGGATGAGGAGAAGCAACAGCGGAACTTTCGAGAGAAGAATCTCATTTCGAAAATTTGCCCTAATCGAGATCCTTGTGAAGATGAAGAAGGAGCAGATGGCATGCTGTCGGTCCATTTGCTTGCTCTACAAGGAGCTGCCGTGCCTCCCAAGCACCACGCGGCCTTGGCCGCTTTTGGAAAGGGCGCGCAGACTGACGCCAGGGTTGAACTTCCAAATAAACTATTTCAGTTCTGTGTCGAGCAACCCGAGCTTCGTCGAGAGTTTTTCATGGGGAAGCGATTCTTGCTCGGAATGTTGGTTGTGACATTGACAGTCATAGTTTGTGGAGCTGTGGAGGGTGGTTCGCTTTCTAAACAGAAGAGTTTGAGAATGAACTCTCTTAGGAAGCAAGCAATAAAAAGCATTCGGAGCGAAGATGGCGACATCATAGATTGTGTAAGCATTTACGACCAGCCTGCTTTTGATCATCCTGCTCTGTGGAATCACACCATTCAGTTGGCACCCACTTATGATCCCACCATAGATGAGCATTCAAAGAAAGCAACAGCAGAAAGGGAAGGGAAGGAGGAAAAGAATTCCATGGTTGTGAAACAAACTTGGAGGAAAAGTGGCAGTTGCCCTGAAGGAACAATACCGATTCGAAGGATCCGAAAGCATGTCCTACTCAAAGCTGAATCGGTAGAACGCTATGGACGAAAGAAACCGATGTTTTCCCAAGAAAACGCTCAGCTTCCCATCACCCGAAGTTCGCATACTCTGCTAACGAATCGTTCGAAGGCATTTCTGCTTACTGCAGGAAACAACTACAATGCAGCTAAAGGAGACATTAAAGTATGTAACCCGAGGGTCGAGTTCGATGACGAATATAGTACTTCCCAAGTGGCTCTATTAACCGGCCCTTACTATAATTTTGAGGCTATCGAATCCGGATGGGCAGTAAATCCAGGTGTTTACGGGGATAGACAGACTCGACTGTTCGTGTATTGGACTGCCGATGCTTCCCAAAAAACAGGCTGCTTTGATCTCACTTGCCCAGGTTTTGTTCAAACAAGCAATGAAATTGCTCTTGGTTCTGCTATTTATCCTATCTCAACTCCCAATGGGCTTCCATATGAAATAATTATGTTCCTTTTTAGAGATTTCAAGACAGATAATTGGTGGGTGCAATATGGAGAAAGCATTAACATAGGTTATTGGCCTCCTGAGCTATTCGGTGCACTAAGTCACACAGCAGAAACAGTACAATGGGGAGGGGAAGTTTACAGCACCAAGATAGGACGGCCTCCTCACACTAGAACAGCTATGGGCAGTGGAAGGTTTCCTGACTTCATTTCTGGTACTTCGGGTTGGGTAAAGCGGATGCGAGTTCGAGATAACTCCATGGTTTTGATGTTTCCTGGTTGGGTTGAGCACTACTCCGATGAATACGATTGTTACGACGTCGATTTCATCCGAGATTATTTAGATGATCCTGAACTATACTATGGAGGACCTGGTAAAAATCCAAGGTGCCCCTAA 1620 46.48 MGEPSIGAPLLSAADFFSGFGFLTGISFPTAETWDEEKQQRNFREKNLISKICPNRDPCEDEEGADGMLSVHLLALQGAAVPPKHHAALAAFGKGAQTDARVELPNKLFQFCVEQPELRREFFMGKRFLLGMLVVTLTVIVCGAVEGGSLSKQKSLRMNSLRKQAIKSIRSEDGDIIDCVSIYDQPAFDHPALWNHTIQLAPTYDPTIDEHSKKATAEREGKEEKNSMVVKQTWRKSGSCPEGTIPIRRIRKHVLLKAESVERYGRKKPMFSQENAQLPITRSSHTLLTNRSKAFLLTAGNNYNAAKGDIKVCNPRVEFDDEYSTSQVALLTGPYYNFEAIESGWAVNPGVYGDRQTRLFVYWTADASQKTGCFDLTCPGFVQTSNEIALGSAIYPISTPNGLPYEIIMFLFRDFKTDNWWVQYGESINIGYWPPELFGALSHTAETVQWGGEVYSTKIGRPPHTRTAMGSGRFPDFISGTSGWVKRMRVRDNSMVLMFPGWVEHYSDEYDCYDVDFIRDYLDDPELYYGGPGKNPRCP 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 461724 465930 + CmaCh05G001080.1 Cma05g00108 294226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00108 539 MobiDBLite consensus disorder prediction 211 237 - -
Cma05g00108 539 Pfam Neprosin 321 532 IPR004314 -
Cma05g00108 539 Pfam Neprosin activation peptide 168 277 IPR025521 -
Cma05g00108 539 PANTHER CARBOXYL-TERMINAL PEPTIDASE 162 537 - -
Cma05g00108 539 MobiDBLite consensus disorder prediction 211 230 - -
Cma05g00108 539 Gene3D - 306 422 - -
Cma05g00108 539 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 162 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00108 - - - cmax:111492515 981.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01768 Cma-Chr1:11877180 Cma05g00108 Cma-Chr5:461724 1.19E-40 dispersed
Cma05g00108 Cma-Chr5:461724 Cma11g00780 Cma-Chr11:3791871 2.87E-100 dispersed
Cma05g00108 Cma-Chr5:461724 Cma08g00568 Cma-Chr8:3232378 5.99E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g49 Blo01g01477 . . . . Bpe02g00477 . . Cmo05g00114 . . Cma05g00108 . . Sed08g1753 . . Bhi04g00486 Tan02g1660 Cmetu03g1286 . Hepe08g1375 . Lcy13g2171 Cla05g01813 Cam05g1937 Cec05g1950 Cco05g2011 Clacu05g1929 Cmu05g1811 Cre05g1937 Cone4ag1646 . Cone17ag0913 . Lsi04g01441 . . . . . . . . . . . . Cmo01g01758 . . . Car01g01365 Car05g00093 Cpe11g00088 Cpe02g00291 Bhi09g03178 . . . Hepe01g1862 Mch11g0397 . . . . . . . . Lsi08g01567 Csa02g01854 Chy03g01630 Cme07g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011410 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00108 Cma_Chr05 FPKM 1.96785 1.929817 1.920983 1.771786 0.212231 0.544845 0.621157 0.330944 0.178486 0.523898