Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00109 ATGAAGAGAGGAAAGGATGACGAGAAGACGGTGGAACCTATATTCCCTAGGCTCCATGTTAATGACACTGAGAAAGGTTGGCCAAGAGCGCCTCCAAGGAATAAGATGGCCCTCTATGAACAGTTCACTATACCATCCAAACGATCGAGTCACAGGGTTTTACCTCTCAAGACAAACATCTCCAGAAAACCAGTTACCACACCATCCTCAAGCCAGGGTACAGGGACTGATAGAGATCTGCGCCTGCCATTAAACCTGTCTTCACCAACTTCTACTAATGAGGTTGGAAATTCTCAAGCTCTCCCATCCGGTGAAGTAAATGTGAATCCTCCATCGGTTCAGCCTGACCAGAGTCAGCAGACAACAGAAGTAGAAGATGAAGACGATTTCACGGTTCCAGTATACGACCAATCCAGGATGGGCAAAAGTAGAGTTAAAAGTAGCAACCTCAAGGAAAAGTTTTCTTCTCCTGGATCAAAACATTCTGGTTCTACAGTTTTGCAAGCTGGTTATGAAAATGGTCAAAGCCGTCTTACATCTTCTAATGTAGTTGAGCCTACAAGAATTGGGGAGCTAGACAATGTTCCGCGCTTGAGAGTGGACTCCCATTCTTTGGGAAAGAATGACAGCTTGAACATTCCTGTTGACAATATTGAGAACCATGTAGAAAGGACTTATAATTCCATGCAGGTGGGGAATGCGGACAAAAGCGACATTGTCTCCGAGAATTCAATGGTTGACTCAATTTCTGGCTCTGATATCTGTCCAGATGATGTTGTAGGAATAATAGGTCAAAAACATTTCTGGAAAGCAAGAAGAGCAATTATTAATAATCACTTCGAAATTTTCCTTAGAGAGTTCGATGGCTCTTGGGGGCTGAGAGCAGAATTGGAGCATATGAAGGATTCCAGTCAACAGAGAGTGTTCGAGGTCCAAGTGTTTGAGTTGCATAGACTTGTCAAGGTTCAACAGTTAATTGCTGGATCAACTCGTCTGATACTTGAAGACGGTATCTTTCTAGATAATTCTTCTCCAACCCCTCTTCCTGCAAAGAAACTTACCTCACATTACACCGTCAAATCACACGTGCAACCTAAGCTCAGTGATGGTCCCAGGAAGCCAAAATACAATGTTGAATGTTCAGCAGAAAATGCTGTTGGAAAGACATCTCTTCCTCCTGCGCCAATTGAGTGTCAGCCTTCAACCTGTGGGCCTTACTCAGTAAACCCGCAACCTGGACCAGGGTTTACAGGTCATCACTGGTTGGTCCCTGTAATGTCTCCTTCTGAAGGACTCATATATAAGCCTTACCCTGGACCAGGATTTGTTTATGGAGGATGTGGACCTTATGGTCCAATGATGAATCCATCCTTTGGATTTCCAGCTTCTGTTCATCAAGGAATTGGAGCTCTTCCTAACACTCCCATGGTTGGTGGTACTTACTTCCCTCCTTTTGGCATGCCAGTCATGAACCGGGGCTTGTCAGGTTCGGCTGTCGATCAAGTTAACCGGTCCACAGGAGATCTAAATCAATTATCGGGAGGCGTGGCCGCTTCCAATATGCAGCATCAGACTTCATATGATGTTTCAACACAGAGAGATAGAGATGAAAATCAAGAAACTGTTTCACAAACTCCAAAGTCTCATGCACCCAAAAGGAATGAGGTTCAAGTAAGTACTGCAAGTAGTCCTGTAACTAGTCCTGCTAGCGAAGTGCAAGCCAATCAAACCGCTGAAAGCCACGATGTGCTTCCACTCGCCCCTGTAGTTCCGCTGCTTGTAGAAAAAGGTCCTCAACCTTCAGACTCCGATCAAACGCGCGTGATTCGAGTTGTGCCACACAATCGAAGATCCGCTAACGAATCAGCTGCACGAATTTTCCAATCTATTCAAAACGAGAGACAACAGTATGACTCAATTTAG 1923 44.72 MKRGKDDEKTVEPIFPRLHVNDTEKGWPRAPPRNKMALYEQFTIPSKRSSHRVLPLKTNISRKPVTTPSSSQGTGTDRDLRLPLNLSSPTSTNEVGNSQALPSGEVNVNPPSVQPDQSQQTTEVEDEDDFTVPVYDQSRMGKSRVKSSNLKEKFSSPGSKHSGSTVLQAGYENGQSRLTSSNVVEPTRIGELDNVPRLRVDSHSLGKNDSLNIPVDNIENHVERTYNSMQVGNADKSDIVSENSMVDSISGSDICPDDVVGIIGQKHFWKARRAIINNHFEIFLREFDGSWGLRAELEHMKDSSQQRVFEVQVFELHRLVKVQQLIAGSTRLILEDGIFLDNSSPTPLPAKKLTSHYTVKSHVQPKLSDGPRKPKYNVECSAENAVGKTSLPPAPIECQPSTCGPYSVNPQPGPGFTGHHWLVPVMSPSEGLIYKPYPGPGFVYGGCGPYGPMMNPSFGFPASVHQGIGALPNTPMVGGTYFPPFGMPVMNRGLSGSAVDQVNRSTGDLNQLSGGVAASNMQHQTSYDVSTQRDRDENQETVSQTPKSHAPKRNEVQVSTASSPVTSPASEVQANQTAESHDVLPLAPVVPLLVEKGPQPSDSDQTRVIRVVPHNRRSANESAARIFQSIQNERQQYDSI 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 465858 470225 - CmaCh05G001090.1 Cma05g00109 294227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00109 640 MobiDBLite consensus disorder prediction 43 120 - -
Cma05g00109 640 PANTHER PROTEIN EARLY FLOWERING 3 1 174 - -
Cma05g00109 640 PANTHER PROTEIN EARLY FLOWERING 3 198 639 - -
Cma05g00109 640 MobiDBLite consensus disorder prediction 505 583 - -
Cma05g00109 640 PANTHER PROTEIN EARLY FLOWERING 3 1 174 IPR039319 GO:2000028
Cma05g00109 640 PANTHER PROTEIN EARLY FLOWERING 3 198 639 IPR039319 GO:2000028
Cma05g00109 640 MobiDBLite consensus disorder prediction 150 166 - -
Cma05g00109 640 MobiDBLite consensus disorder prediction 505 528 - -
Cma05g00109 640 MobiDBLite consensus disorder prediction 1 166 - -
Cma05g00109 640 MobiDBLite consensus disorder prediction 543 580 - -
Cma05g00109 640 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00109 K12125 ELF3; protein EARLY FLOWERING 3 - csv:101203735 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00109 Cma-Chr5:465858 Cma17g00745 Cma-Chr17:6053529 6.58E-17 dispersed
Cma05g00109 Cma-Chr5:465858 Cma12g00626 Cma-Chr12:3316405 1.01E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g48 . . Bda01g00608 Bda03g00152 Bpe02g01532 Bpe02g00476 . . Cmo05g00115 Cmo12g00565 . Cma05g00109 . Car12g00573 Sed08g1747 Cpe07g00546 . Bhi04g00485 Tan02g1661 Cmetu03g0883 . Hepe08g1374 . Lcy13g2170 . . . . . . . . . Cone17ag0912 Cone20ag0255 . . . . Blo17g00297 Blo18g00293 Bda01g01321 Bda13g01613 Bpe14g00253 . Bma01g00931 . . . . . . . Car05g00094 Cpe11g00089 . . . . . . . . . . . . . . . Lsi08g01566 Csa02g01855 Chy03g01629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005519 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00109 Cma_Chr05 FPKM 20.664137 21.437983 27.755924 28.15661 43.787685 43.764126 44.456184 2.824197 2.358658 2.573667