Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00111 ATGGATTTCATGAAGGTTTTCGATCAAACTGTCCGTGAAATAAAGAGGGAGGTGAATTTGAAGGTTCTGAAGGTTCCCGAAATCGAACAGAAGGTGCTGGATGCAACAGATGATGAACCATGGGGTCCTCATGGGTCTGCCTTGGCAGAAATAGCGCAAGCTACAAAGAAATTTTCTGAAACTCAGATGGTTATGAATGTTCTCTGGACAAGATTGAGTGAGACTGGTAAGAATTGGCGTCTTGTCTATAAGGCTTTGGCTGTTATAGAGTATTTGGTGGCACATGGATCTGAACGTGCAGTGGATGACATTATCGAACATACTTTCCAGATATCTTCGCTCTCGAGTTTCGAACATGTTGAACCAAATGGAAAGGACATGGGCATAAATGTCAGAAAGAAGGCTGAAAACATTGTTGCCCTTTTGAATGATAAAGATAAAATACAAGAAGTGAGAAACAAAGCAGCTGCAAATCGTGAAAAGTACTTCGGACTTTCTTCTACTGGAATTACTTACAAGTCAGGTTCAGCCTCGTATGGCAGCAGTAGTTCTTATAGCAGTGATAGTTATCAAGGTCAGAGTAGCTTTAGAGGTGATAGATTTCGTGATAGGAGCAGCAACAGGGATTCATTTAGAAAGGAAAAAAATGATCAAGATGATTTTAAAAAGTCAGATTGGGTAAAGCAGGATTATGGCATGGGTTCTGCAAAAAACAGCAGCAAGGATCAAGGTAAAACATCATTTGGTACATCAAAGCCATCAAAAAAGTCGGAAGACTCTGCAAATCAGATTGCCTCCTTCAGTTCTAGTACCCCTACAAATAATTCTGACGAAGATTTTGATGATTTTGATCCTCGTGGAACTTCCACCACCACCACCACCACCACCACCACCACCACAAAAGCTGCTGCACCAAGCCCCAAAAAGGTGGATCTTTTTGGAGACAGTTTAATCGGAGATCTCATGGATGCTCCAACTCTTGTTCCTCCTGGAAAGCCTGACAGCAGTTCTCCGGTGGTTGATCTGTTTGCAGATGCTACTTTTGTATCAGCTTCAGCGCAAGTGGAAAAGGAACCAAATTCCCCATCAAAGACTGAGATTGATCTATTCGCTTCACAACCGGCTTCGGTTTCTCCAACAGTCCACTTTTTTGCCTCTCCTGAGCCGGTTGCGCAAACAGAAACCAACTTTGCCGATGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTGCAACAATTGACTTTTTTGCTTCTTCTAAGCTAGTTGTGCAAACGGAAACTAACTTTGCCAGTGCAGCAAGAGACATTAAAGCTTCACAACCCGCTTCAGTTTCTGCACCAATTGACCCTTTTGCCTCTGCTGAGCCGGTTGTGCAAACAGAAACCAACTTTGCTAGCACAAAAAGAGACAGTAAAACTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATTTTTTGGGTGCAACTTCTTCGCGTTCTGAACCAGTGTCCTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTTGTAATTTAGATGGAAAATTTATCAACAGTTCAACAGCCCCAGCGAAGAAGAATACTTTCCAGGTCAAGTCTGGGATTTGGGCAGATTCACTTAGTCGAGGATTGATTGATCTTAATATCTCCGCTCCCAAGAAGGTTTCCCTGATAGAAGTCGGTGTCGTGGGCGGACTGAGCGATTTCTCAAACGAGAGGGAGAAAGGACCGGCACCTACTTATCACATGGGGCAAGCAATGGGTGCAGGGTCTGGTCTTGGTCGGACAGGATCGCAGGGGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATATCAATTTGGTGGTTTCCAGAAGTAA 1890 43.7 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGSALAEIAQATKKFSETQMVMNVLWTRLSETGKNWRLVYKALAVIEYLVAHGSERAVDDIIEHTFQISSLSSFEHVEPNGKDMGINVRKKAENIVALLNDKDKIQEVRNKAAANREKYFGLSSTGITYKSGSASYGSSSSYSSDSYQGQSSFRGDRFRDRSSNRDSFRKEKNDQDDFKKSDWVKQDYGMGSAKNSSKDQGKTSFGTSKPSKKSEDSANQIASFSSSTPTNNSDEDFDDFDPRGTSTTTTTTTTTTTKAAAPSPKKVDLFGDSLIGDLMDAPTLVPPGKPDSSSPVVDLFADATFVSASAQVEKEPNSPSKTEIDLFASQPASVSPTVHFFASPEPVAQTETNFADAARDSKASQPASVSATIDFFASSKLVVQTETNFASAARDIKASQPASVSAPIDPFASAEPVVQTETNFASTKRDSKTVDPFAALPLNSFDGSDFLGATSSRSEPVSSEPSQNPVGGPSCNLDGKFINSSTAPAKKNTFQVKSGIWADSLSRGLIDLNISAPKKVSLIEVGVVGGLSDFSNEREKGPAPTYHMGQAMGAGSGLGRTGSQGIGDDFFSQLSGQQYQFGGFQK 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 477881 486063 - CmaCh05G001110.1 Cma05g00111 294229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00111 629 MobiDBLite consensus disorder prediction 181 310 - -
Cma05g00111 629 MobiDBLite consensus disorder prediction 233 276 - -
Cma05g00111 629 PANTHER EPSIN/ENT-RELATED 1 423 - -
Cma05g00111 629 PANTHER EPSIN/ENT-RELATED 403 620 - -
Cma05g00111 629 SMART enth_2 26 152 IPR013809 -
Cma05g00111 629 Pfam ENTH domain 27 147 IPR013809 -
Cma05g00111 629 MobiDBLite consensus disorder prediction 197 227 - -
Cma05g00111 629 PANTHER CLATHRIN INTERACTOR EPSIN 1 403 620 IPR033521 GO:0006623|GO:0030276
Cma05g00111 629 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 423 IPR033521 GO:0006623|GO:0030276
Cma05g00111 629 MobiDBLite consensus disorder prediction 181 196 - -
Cma05g00111 629 MobiDBLite consensus disorder prediction 494 516 - -
Cma05g00111 629 MobiDBLite consensus disorder prediction 286 304 - -
Cma05g00111 629 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Cma05g00111 629 Gene3D - 24 163 IPR008942 -
Cma05g00111 629 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
Cma05g00111 629 CDD ENTH 28 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00111 K12471 EPN; epsin - csv:101214728 1006.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00111 Cma12g00623 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00111 Cma-Chr5:477881 Cma06g01633 Cma-Chr6:10167263 2.17E-12 dispersed
Cma12g00623 Cma-Chr12:3293812 Cma05g00111 Cma-Chr5:477881 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00111 Cma_Chr05 FPKM 10.307535 11.000331 9.778935 10.834204 7.48167 7.235665 9.244644 11.045879 10.70043 9.609445