Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00112 | ATGATTAACGAATCAATGTTTCTCAATCCCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCATATTTCACCGCGGGCAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCGTCGTTCTGGGAGGATCAAGACTTGCCGGCCATTGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACAAAATGTCCCTATGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCATGCCGTGACGGAGCAGTCTGCCGAAGGCGGGTCTGTTTCTTCGCCCACTCGTCGGAGCAACTCCGGATTCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCGCCGCCCCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCCGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAGCCACCGGTGGGGAATCGTTCAGTAGATTAGTCGCATTGATGCACAATCTCCACTTTGATGAATTAAAAACGAATCCCGGGATCTCCGGCTTCGGTCCAAGTTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGATAACTCGGTGGAGCGTGTTCGGCCTCTGATATTGGCCGGATCTCGGAACTAA | 921 | 54.94 | MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLPAIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIRSPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTNPGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLILAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 487440 | 488360 | - | CmaCh05G001120.1 | Cma05g00112 | 294230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00112 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 9 | 242 | IPR045234 | - | |
| Cma05g00112 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 251 | 299 | IPR045234 | - | |
| Cma05g00112 | 306 | MobiDBLite | consensus disorder prediction | 178 | 211 | - | - | |
| Cma05g00112 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 251 | 299 | - | - | |
| Cma05g00112 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 9 | 242 | - | - | |
| Cma05g00112 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872 | |
| Cma05g00112 | 306 | Gene3D | - | 107 | 177 | - | - | |
| Cma05g00112 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872 | |
| Cma05g00112 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872 | |
| Cma05g00112 | 306 | MobiDBLite | consensus disorder prediction | 194 | 211 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g00112 | Cma09g00326 | CCT | |
| Cma05g00112 | Cma09g00326 | ECH | |
| Cma01g01767 | Cma05g00112 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00112 | Cma-Chr5:487440 | Cma10g00690 | Cma-Chr10:3123164 | 6.91E-77 | dispersed | |
| Cma12g00622 | Cma-Chr12:3290026 | Cma05g00112 | Cma-Chr5:487440 | 1.66E-165 | wgd | |
| Cma05g00112 | Cma-Chr5:487440 | Cma09g00326 | Cma-Chr9:1342960 | 4.79E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00112 | - | - | csv:101214248 | 517.694 |