Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00114 ATGGAAGATCAGTACAACCCTCACGGTGATAGATCGAGGGGAAATTTCTTGTTCACTTCAGTCCCTGTTTTGGCCACAAATTCTTCTTCTCCTGGGGGCAATTTCGTAACTAGACCCTCTTCTTCAAATGGCGGAGGCGCCTCCATTGTTGGGAATCAGATCATGGCGGTAAACACTAATCTCGGCGGTGACTGTAACTTTCCGGCGTCCGATCGTTTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATCATCATCATCATCATCAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGAGGTGGTAATAATAGTAACGATTTGGATTCCATGAAAGCCAAAATCATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTCGGAGCTCCTCCAGAGGTAGCGGCGAAACTTAGTTCGGTAGGGGAGGAATTTGAACAGCGGCGGCGGTCTTCTACGGCGTCCACCGGCGGTTCAACTGACCCTGAACTGGATCACTTCATGGAAGCTTACTACGGGATGTTGGTGAAGTATAGAGAGGAGCTAACGAGGCCCATTCGAGAAGCCGCAGATTTCATGCACAGAATTGAATTTCAGCTCAATACTCTCTGCAATGCCTCTTTTCAAATCTTAGCATCTGCAGCGACAGAAGAGAAGGGATGGTCGGAAGAGGAGCAAGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGAAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGCGCAGTTTATGGGCATGGAGGGGTTTTATCACCCCAATGCTGCTGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGGTGACTCCCATTATCGTTTGGGGCCATGA 1161 48.15 MEDQYNPHGDRSRGNFLFTSVPVLATNSSSPGGNFVTRPSSSNGGGASIVGNQIMAVNTNLGGDCNFPASDRFVKVEPSGSQSQNHHHHHQVHDFHYHLMREFQISRGGNNSNDLDSMKAKIISHSLFSNLLQAFLDCQKVGAPPEVAAKLSSVGEEFEQRRRSSTASTGGSTDPELDHFMEAYYGMLVKYREELTRPIREAADFMHRIEFQLNTLCNASFQILASAATEEKGWSEEEQEKSREAEREVGDQMDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDAQFMGMEGFYHPNAAAAAAAAAFYFDGHFMGDSHYRLGP 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 493551 496196 + CmaCh05G001140.1 Cma05g00114 294232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00114 386 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Cma05g00114 386 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Cma05g00114 386 MobiDBLite consensus disorder prediction 231 258 - -
Cma05g00114 386 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 375 - -
Cma05g00114 386 Pfam KNOX1 domain 118 159 IPR005540 GO:0003677|GO:0005634
Cma05g00114 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 375 - -
Cma05g00114 386 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Cma05g00114 386 Pfam ELK domain 261 282 IPR005539 GO:0003677
Cma05g00114 386 MobiDBLite consensus disorder prediction 152 176 - -
Cma05g00114 386 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Cma05g00114 386 SMART ELK_2 261 282 IPR005539 GO:0003677
Cma05g00114 386 SMART ELK_2 176 196 IPR005539 GO:0003677
Cma05g00114 386 SMART HOX_1 283 348 IPR001356 GO:0003677
Cma05g00114 386 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Cma05g00114 386 CDD homeodomain 293 345 IPR001356 GO:0003677
Cma05g00114 386 Gene3D - 278 351 - -
Cma05g00114 386 Pfam KNOX2 domain 173 217 IPR005541 GO:0003677|GO:0005634
Cma05g00114 386 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Cma05g00114 386 SUPERFAMILY Homeodomain-like 282 354 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00114 Cma09g00322 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01765 Cma-Chr1:11858719 Cma05g00114 Cma-Chr5:493551 2.45E-118 dispersed
Cma05g00114 Cma-Chr5:493551 Cma07g00329 Cma-Chr7:1431763 1.30E-78 dispersed
Cma12g00621 Cma-Chr12:3272455 Cma05g00114 Cma-Chr5:493551 9.53E-148 wgd
Cma05g00114 Cma-Chr5:493551 Cma09g00322 Cma-Chr9:1326533 3.62E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35013 PF03791 KNOX2 3.00E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00114 - - csv:101219997 490.345