Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00115 ATGAATCAGTTGCTTGGAGGAGGCTGCCATGGCGATGCGTTTAGGGCAATATCTTCCATGCCGGAGCCTTGCCAATCATCGCCCATCAGCGATGGTGATAGCTGCGATTTTGATTGGGATAGTCTTGGATTTGGGCTGATGCCAACAGATTATATGTATATTATGAAATGCGCTATAGATGAGAATTTTGAACGAGGTCAAATCAGCCGTTATGGCAACATTGAGCTTAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTAAAAGCATATAGGAAAGACGATGGAGGGCTTCTTCTGTTTCGTCCACACGAAAACGCCCTCCGTATGAGGACGGGCGCTGACCGAATGTGTATGCCATCGCCCACCGTCGAGCAATTTGTTGATGCTGTGAAGCAAACTACCATTGCTAATAGGCGTTGGGTCCCTCCGCCGGGGAAAGGATCACTTTACCTAAGGCCTTTGCTCATTGGAACGGGTCCCATTCTTGGGTTGGCACCCTCCCCTGAGTATACTTTTCTAGTGTTTGCTTCCCCTGTTCGCAACTATTTTAGGGAAGGTTCCGCACCCTTGAACCTATATGTCGAGAATGAATTCGACCGAGCATCTCGTGGCGGAACCGGAGGTGTGAAAAGCATTTCGAATTATGCTCCGGTGTTAAAAGCTATAACCCGAGCGAAAAGCCGAGGATTTTCTGATGTGTTATACCTTGATTCAGTGAATAAGAGAGATGTGGAGGAAGTTTCTTCCTGCAACATTTTTATTGTAAAGGGCAATGTTATTTCAACTCCTGCTACACATGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCATCATTGAAATTGCCCGTGATCGCGGTTACGAGGTCGAGGAACGGGCTATTAACGTGGAAGAAGTGTTCGACGCTCGTGAAGTTTTCTGCACGGGAACGGCTGTTGGGGTGGCTCCTGTTGGGAGCATCACATGTATGGATAGAAGGATTGAGTACCAAACAGGTGCGGAGACGACATGCCAGGAACTGTATTCAACTCTTGTTGGGATTCAAACTGGAACCACTGAGGATAAGATGGGATGGACTGTTGAGATCTGTTGA 1110 47.57 MNQLLGGGCHGDAFRAISSMPEPCQSSPISDGDSCDFDWDSLGFGLMPTDYMYIMKCAIDENFERGQISRYGNIELSPSAGVLNYGQGLFEGLKAYRKDDGGLLLFRPHENALRMRTGADRMCMPSPTVEQFVDAVKQTTIANRRWVPPPGKGSLYLRPLLIGTGPILGLAPSPEYTFLVFASPVRNYFREGSAPLNLYVENEFDRASRGGTGGVKSISNYAPVLKAITRAKSRGFSDVLYLDSVNKRDVEEVSSCNIFIVKGNVISTPATHGTILPGVTRKSIIEIARDRGYEVEERAINVEEVFDAREVFCTGTAVGVAPVGSITCMDRRIEYQTGAETTCQELYSTLVGIQTGTTEDKMGWTVEIC 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 497946 500477 + CmaCh05G001150.1 Cma05g00115 294233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00115 369 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 33 365 IPR036038 GO:0003824
Cma05g00115 369 Gene3D - 23 196 IPR043131 -
Cma05g00115 369 CDD BCAT_beta_family 75 356 IPR033939 GO:0004084|GO:0009081
Cma05g00115 369 PIRSF BCAT1 22 369 IPR005786 GO:0004084|GO:0009081
Cma05g00115 369 Gene3D - 197 368 IPR043132 -
Cma05g00115 369 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 15 368 - -
Cma05g00115 369 PANTHER AMINO ACID AMINOTRANSFERASE 15 368 IPR005786 GO:0004084|GO:0009081
Cma05g00115 369 Pfam Amino-transferase class IV 88 326 IPR001544 GO:0003824
Cma05g00115 369 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 64 368 IPR005786 GO:0004084|GO:0009081
Cma05g00115 369 ProSitePatterns Aminotransferases class-IV signature. 252 281 IPR018300 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00115 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 653.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00882 Cma-Chr3:6493144 Cma05g00115 Cma-Chr5:497946 8.76E-172 dispersed
Cma05g00115 Cma-Chr5:497946 Cma07g00623 Cma-Chr7:2692750 3.08E-174 dispersed
Cma05g00115 Cma-Chr5:497946 Cma12g00621 Cma-Chr12:3272455 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00115 Cma_Chr05 FPKM 4.25614 4.63134 41.587692 39.288357 3.588106 3.287186 2.764054 60.773613 56.626236 62.469215