Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00120 ATGACCGATGACAATGGAAAACCGGATAAGGGTGATCGATGGCAATCGTCAACACCACCGCATCAAGAGAAAGCGGAGGACTTGAAACTCTGGGCAATTCTACTTTTCGGTTTAATCGGTGCCTCTGCCACCACTCTCGCCATTGGTCATCTGCGGAGAACTGGTGATTGGGTATATACTCAGTTGAGCAGGTCACAATCATCACGGGGTGGAGGAAGTGGTCGTTCTTTCCGGTCATCGTTTCAGGAGGAAGCATGGAAAAGGTATAATCGTAGGCTGCAAGAGGAATATGAAGAAGAAATGGAGAGGGTGGAGCGCATAAGGCGCATGCAGAATGTATTCAACAGAGAGAGGAACAAATACAAGAGAGGCTACGAAAGCTGGGGAGAGAATGGTGGTGGTGCGTTTCATCAACATCACCAGCGAGATGATTGGTATTGGAAAGCCGAGACGTTCTACAGAGAACAAAGTAATAACTATAAGGAAACTCCAAGAGATAGAACAAGCTACTTGCTATCGCATCATTATACAGTTTTGGGTCTCAACAGGTGTCGAAAAACACCTTATACAGATGCTGAGATTAAGACAGCATTCCAATCCAAGGCGAAGCAATTTCATCCAGATCAGAACCAGGATAATAAAGAGGCTGCTGAGGCCAAGTTCAAAGAGGTGATGACATCTTATGAGGCCATAAAGTTAGAAAGAAAGAGCGGTTGA 717 45.47 MTDDNGKPDKGDRWQSSTPPHQEKAEDLKLWAILLFGLIGASATTLAIGHLRRTGDWVYTQLSRSQSSRGGGSGRSFRSSFQEEAWKRYNRRLQEEYEEEMERVERIRRMQNVFNRERNKYKRGYESWGENGGGAFHQHHQRDDWYWKAETFYREQSNNYKETPRDRTSYLLSHHYTVLGLNRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYEAIKLERKSG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 518061 520697 + CmaCh05G001200.1 Cma05g00120 294238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00120 238 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 237 - -
Cma05g00120 238 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 237 - -
Cma05g00120 238 SUPERFAMILY Chaperone J-domain 170 232 IPR036869 -
Cma05g00120 238 CDD DnaJ 175 229 IPR001623 -
Cma05g00120 238 Pfam DnaJ domain 175 234 IPR001623 -
Cma05g00120 238 ProSiteProfiles dnaJ domain profile. 174 236 IPR001623 -
Cma05g00120 238 MobiDBLite consensus disorder prediction 1 21 - -
Cma05g00120 238 SMART dnaj_3 173 236 IPR001623 -
Cma05g00120 238 PRINTS DnaJ domain signature 198 213 IPR001623 -
Cma05g00120 238 PRINTS DnaJ domain signature 216 236 IPR001623 -
Cma05g00120 238 Coils Coil 83 110 - -
Cma05g00120 238 Gene3D DnaJ domain 172 237 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00120 - - - csv:101213280 403.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00120 Cma12g00617 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00120 Cma-Chr5:518061 Cma07g00932 Cma-Chr7:4478155 7.37E-07 dispersed
Cma12g00617 Cma-Chr12:3251059 Cma05g00120 Cma-Chr5:518061 2.55E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00120 Cma_Chr05 FPKM 15.798027 15.889993 22.067423 20.740862 12.591167 11.343693 11.148239 41.042179 49.111816 46.130898