Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00122 ATGCTACCCAACAACATTGCTCATCTGCCTCTTCTCTTTGTTGAGTTTAAAGAGACCAACTGGGTTCCCTCTTCTCCTCTATTGCTCGCACAACTGGACTCTTCCTTCCAAAAGGCCAAGCCTACCATTCCTGGGCTAGAGAAGAAAGAAAGAAGAGCAGAAGAGAAGATGAAGTCGATGAACGAGAATGAGAATAATAACAATAATAATAATAATAATAATAACAACAGCAGCAGTTGGTTGGGATTCTCTCTTTCTCCCCACATGAAAATGGAGGTTACTTCCTCTGATCATCCCTACAATCATCACCATTCTCACTCTGCTTCCAATGCCTTCTACCTGTCTCCTCATTACAACAATAACACTGAAATCTTTTATGGGATTGCTGAAAATGCTTCTCTTCACCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCGCTCAAATCCGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCACAAACCGAAGGGATGGTTCCGAGTTCTTCGCCGAAGCTAGAGGATTTTCTGGGTGGTGCAACAATGGGGGGTCGAGGCTATTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCCTTGGACCTTCTTCATAGACCCATTAGAGAAAACCAACAGCAGCAGCAGCAGATTTTGATGCAAAATACCCATCAATACTACTCAGGGCTGGTTCCATCTTCCATTGGGATTGGAGGTTGCGATCCTCAAATTCTACCCGCTGACGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTATGCCGGCGCCCATAATAGTCTGGACCAACAAATTACTGGAGGCGGCGGAGGCGCTCTCGTGCATGACGGCGGCAGTGGCGGTTACTCTGTCTCCATTGGTGGAATGGGCTGTGGGGAATTGCAGTCGTTGAGCTTGTCGATGAGCCCAGGTTCTCAATCGAGCTCATTCACGGCTTCTGGCCAGATCTCCCTTACTGGAGGCGACGGCACCGTCGTAGAAACTAAAAAACGAGGCCCTGGAAAACTCTGCCAGAAGCAGCCCGTTCACCGTAAGTCCATCGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACCAGACACAGGTGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACGCATATTAACTTTCCTTTGGAGAATTATCAGACTGAACTGGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCTAGGGGCGCTTCAGTTTTCCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAGGCGAGGATTGGGAGAGTTGCTGGAAACAAAGATCTTTACCTTGGGACATTCAGCACGCAAGAGGAAGCGGCTGAGGCTTACGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCGGTCACCAACTTTGACATTTCAAGATACGACGTCGAGAGAATCATGGCCAGCAATACCCTACTGGCTGGCGAGCTTGCCAGAAGGAACAAGGAGGTGGTCGTCGACCCAAGAACTGATGCTGCTGCCGCCGCCGTTGCCTACGATTCCTCGGTTGCATCTAACAATAATGGCGGGATTGAAATGAATCCAGACGGCAATGGTACGGATTGGAAGATGGCATTGTATCAGAATCCTTCACATCAACAACACCAACAGGCAGCTGCTACTTGTGTTGCTGAATCACTGGATCATCATCATAATAATAAGTCGATGGGAGACTATCCAAATGCTTCATTCTCGATGGCATTGCAGAACTTGATCGGTATCGAAGCGTTGAACACTACTAACAGTCATGGAATTGAAGATGATTTGAACAAACAAGTAACCCATTTTTCAAATTCGTCATCGCTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGCCCTGACAAGACGAATGCGTCAATGGCGTCGAAGCTAATTGGTGCAACAAGCGGGGTGGGGTCTTGGTACCCAACCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTGA 2202 47.73 MLPNNIAHLPLLFVEFKETNWVPSSPLLLAQLDSSFQKAKPTIPGLEKKERRAEEKMKSMNENENNNNNNNNNNNNSSSWLGFSLSPHMKMEVTSSDHPYNHHHSHSASNAFYLSPHYNNNTEIFYGIAENASLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGGRGYFNQNAESEPDREHSLDLLHRPIRENQQQQQQILMQNTHQYYSGLVPSSIGIGGCDPQILPADDDEIPCLRNWVSRSHYAGAHNSLDQQITGGGGGALVHDGGSGGYSVSIGGMGCGELQSLSLSMSPGSQSSSFTASGQISLTGGDGTVVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKEVVVDPRTDAAAAAVAYDSSVASNNNGGIEMNPDGNGTDWKMALYQNPSHQQHQQAAATCVAESLDHHHNNKSMGDYPNASFSMALQNLIGIEALNTTNSHGIEDDLNKQVTHFSNSSSLVTSLSSSREGSPDKTNASMASKLIGATSGVGSWYPTPQQLRPTAISMAHLPVFAAWNDT 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 533391 537101 - CmaCh05G001220.1 Cma05g00122 294240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00122 733 MobiDBLite consensus disorder prediction 43 61 - -
Cma05g00122 733 ProSiteProfiles AP2/ERF domain profile. 369 435 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 PRINTS Ethylene responsive element binding protein signature 370 381 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 PRINTS Ethylene responsive element binding protein signature 511 531 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 76 731 - -
Cma05g00122 733 Coils Coil 43 70 - -
Cma05g00122 733 SMART rav1_2 369 441 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 SMART rav1_2 471 535 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 CDD AP2 368 435 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 ProSiteProfiles AP2/ERF domain profile. 471 529 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 MobiDBLite consensus disorder prediction 39 81 - -
Cma05g00122 733 Pfam AP2 domain 470 521 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 Pfam AP2 domain 369 427 IPR001471 GO:0003700|GO:0006355
Cma05g00122 733 Gene3D AP2/ERF domain 368 437 IPR036955 GO:0003700|GO:0006355
Cma05g00122 733 Gene3D AP2/ERF domain 471 531 IPR036955 GO:0003700|GO:0006355
Cma05g00122 733 SUPERFAMILY DNA-binding domain 368 437 IPR016177 GO:0003677
Cma05g00122 733 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 731 - -
Cma05g00122 733 SUPERFAMILY DNA-binding domain 470 531 IPR016177 GO:0003677
Cma05g00122 733 MobiDBLite consensus disorder prediction 62 81 - -
Cma05g00122 733 CDD AP2 470 531 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00890 Cma-Chr3:6544296 Cma05g00122 Cma-Chr5:533391 8.49E-176 dispersed
Cma05g00122 Cma-Chr5:533391 Cma07g00631 Cma-Chr7:2740186 0 dispersed
Cma12g00614 Cma-Chr12:3226740 Cma05g00122 Cma-Chr5:533391 0 wgd
Cma05g00122 Cma-Chr5:533391 Cma09g00308 Cma-Chr9:1272511 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35015 PF00847 AP2 1.70E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00122 K09285 - csv:101212797 1029.62