Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00124 ATGGATTTTGGAGTTGTGGGTTTAGATGGGGTGGTGGTGGGTTCTTCACACGACACATCGGGTTTCTCTTCTCTTGCTTCTTCAGATCCTGAAACGAAGCAGAAATGGTACGAATCTGGTGTTGGATTTCTACAGAAGCAGGAGCGATCTGGCAGTGGTGCTGCAGCTGAAGATGAAGACTTGAGAACCTCAAAACTGCCCAAAACTTATGATGACTTGTCCTCTTCTTCTTCTTCCACTAAAGGATTGCTTTTTCCCCACCGACAGGTGGCGTCTTTGCTCAGATCTAATTCCCCGTTCTTTCTCTCCGATTCTAACCAACACCCTCACCAAATGCTCTGTTTTTCATCTCCCAAAACAGACCCTTTGCCTCCCGACAAGACCTCTTCTCTCTCCCGTGTTTCCCCTAATTTCTACCATTCCTCCGCCCCAAGAAATGCAGGCTGCAATTATGGGGGTTTGAACGGCGGAAGCATGAACGGCAGTGGTTTTATAGGTGTTAGAGCTCCGTTCACTCCATCCCAATGGATGGAGCTCGAACACCAGGCTTTGATCTACAAATACATTACTGCTAATGTCCCTGTTCCTTCTAATTTGCTTATTCCCATCAGAAAGGCCCTCGAATCTACTGGCTTCTCGGCCTATTCCGCCGGATTTCTCCGACCCGGCGCCGTGGGATGGGGATCTTTCAATATGGGGTTTTCGAATAATAGTGATCCTGAACCGGGAAGGTGTCGTCGAACCGACGGAAAGAAATGGCGGTGCTCTAGAGACGCAGTTGCCGATCAGAAGTACTGTGAACGGCATATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAAGCCAAGCTGGCCACTCCCACTCTGTTGCCAGAGCTTCCAATATTACCACCGCCGCCAACGCCACTAAACTGATTTCCTCTTCAGCTTCTGCTGCGGCGGTGCCCAGCAACGCTTCCTCCAACACCCTCTCCTTTGCTGACCAGCACTTCAAGAATATCCAATGCGCTGAATCTCACCCGCCTCCCTCCTCCACCACTGCTCAAATCAACAGAATGTTAATAACAAACAAAGAGAATGGTAGCATTGCGTTGCATGACACACCTACCACATCTGGTTTTTCTGTGCTGTCTCCTTCGATTGAAATGAAACAACAACCCAAACAGCTTCCGTTTGCAGTTCAGAAACAGCAGAACCCTTTTGAAGAATCTGCGAGAGCAGAGTTTGGGCTTGTTTCTTCCAATTTCCTCCTGAATCAGTCGCAAAAGGCCTCTTCTTTGATGAACTACAGAGGTTACAATCCGTCAGAGGGCATCAGTAGTACTCAAGAGGCAGCCGAAACCCAACATTCTGTTCGTCAATTCTTCAACAATTGGCCCAAGAACCAATCTGACAGCTCTTCAGTTTCTTGGTCAAACTCGAATCTGGATTTGCAATCCGACAGGACTCAGTTATCTATATCCATCCCAATGGCTACTTCGGATTTCAGATCCTCAACTTCGTCCCCAGCAAACGAGAAAGTCACCCTTTCACCCTTGAAGTCGTTGCAGGAGATGGACCCTCTTCAAATGGGATTGGGAGTGGGGAATGTAATGGATGAACCAAACAGCAGGCAGACAAATTGGATCCCCATCTCGTGGGAGAGCTCCATGGGCGGTCCCCTCGGAGAGGTTCTTCAGAGTACAAACAACATCGGCGGGGAATTGAAGAGCTCGTCGATACTCAACCTGATGACAGAAGGGTGGGACAACAGTCCATCGCTAGGGTCGTCCCCCACCGGGGTTCTCCAGAAGACGGCATTTGGTTCATTCTCAAACAGCAGCACAGGGAGCAGCCCAAGAACAGAGAACAACAAGACTCATGAAGGAGGAGGAGGAGGAGGAGGCAGCAGCCAGTGCAGCGATCGTTTTGTGAATTCTTCTTCATCTTTGCCTAGTGTTTGA 1947 49.26 MDFGVVGLDGVVVGSSHDTSGFSSLASSDPETKQKWYESGVGFLQKQERSGSGAAAEDEDLRTSKLPKTYDDLSSSSSSTKGLLFPHRQVASLLRSNSPFFLSDSNQHPHQMLCFSSPKTDPLPPDKTSSLSRVSPNFYHSSAPRNAGCNYGGLNGGSMNGSGFIGVRAPFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRKALESTGFSAYSAGFLRPGAVGWGSFNMGFSNNSDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVESQAGHSHSVARASNITTAANATKLISSSASAAAVPSNASSNTLSFADQHFKNIQCAESHPPPSSTTAQINRMLITNKENGSIALHDTPTTSGFSVLSPSIEMKQQPKQLPFAVQKQQNPFEESARAEFGLVSSNFLLNQSQKASSLMNYRGYNPSEGISSTQEAAETQHSVRQFFNNWPKNQSDSSSVSWSNSNLDLQSDRTQLSISIPMATSDFRSSTSSPANEKVTLSPLKSLQEMDPLQMGLGVGNVMDEPNSRQTNWIPISWESSMGGPLGEVLQSTNNIGGELKSSSILNLMTEGWDNSPSLGSSPTGVLQKTAFGSFSNSSTGSSPRTENNKTHEGGGGGGGSSQCSDRFVNSSSSLPSV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 545401 548469 - CmaCh05G001240.1 Cma05g00124 294242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00124 648 Pfam QLQ 170 204 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g00124 648 MobiDBLite consensus disorder prediction 52 67 - -
Cma05g00124 648 MobiDBLite consensus disorder prediction 586 648 - -
Cma05g00124 648 MobiDBLite consensus disorder prediction 19 81 - -
Cma05g00124 648 ProSiteProfiles QLQ domain profile. 170 205 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g00124 648 MobiDBLite consensus disorder prediction 19 34 - -
Cma05g00124 648 Pfam WRC 240 282 IPR014977 -
Cma05g00124 648 SMART QLQ_2 169 205 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma05g00124 648 PANTHER - 34 623 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma05g00124 648 PANTHER GROWTH-REGULATING FACTOR 9 34 623 - -
Cma05g00124 648 ProSiteProfiles WRC domain profile. 239 283 IPR014977 -
Cma05g00124 648 MobiDBLite consensus disorder prediction 269 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00124 - - - csv:101202772 1004.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00124 Cma12g00612 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00893 Cma-Chr3:6556430 Cma05g00124 Cma-Chr5:545401 2.66E-121 dispersed
Cma05g00124 Cma-Chr5:545401 Cma07g00633 Cma-Chr7:2751972 6.16E-137 dispersed
Cma14g01991 Cma-Chr14:13976215 Cma05g00124 Cma-Chr5:545401 6.16E-13 transposed
Cma12g00612 Cma-Chr12:3214305 Cma05g00124 Cma-Chr5:545401 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35016 PF08879 WRC 3.60E-21 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00124 Cma_Chr05 FPKM 12.826189 11.218091 3.099029 3.535423 45.223007 40.713848 48.052059 6.853825 6.251912 6.211485