Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00129 ATGCCCATCTACCACCCCTCCATTTGTACACAACGGGATCCCAAGCTCCTCGTCGACTGCGGCGCGCACATTCTAGATCTCCAAACTGTGGTCAAAGATGGCATTCTTGGCGGCGGAGGCGGGGGGGTAATCGCCACCGATGGCGGTGCCCAGAAGTTGGATCTCAAGGAGATGATTGAAGAGCTGGAGTCGTCCATAGAGGTCCCATCGGTGTTCATTTGCCCAATCTCGCTCGAGCCCATGCAAGATCCAGTCACCCTCTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTCAAATGGTTCTCTTTAGGCCACTTGACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGCTGATTCACACCTGGTTTTCGCAGAAGTACTTAGCATTGAAGAAGAGATCAGAGGACGTGCAGGGGAGAGTTTTAGAGCTCTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTTCAGTCCCTTAAGGATCTCCGACATGTCGTCACCGCCCATTCCTCCGTCAAGAAGATGGTGGTCGACAACGGCGGTGTTGCTCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGGCGTGGGGATTCTCGTCAATTTGGATCTGAATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATATCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACCAAATTCATCAAGATGTTGACGGAGGGCGATGCTTCAACAATAGAGAACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAAAGACATCCAAACGGAGTAACCGCCGCACTCACTTTACTCCGAACGCTTTGTTCAAACGAATCAATCAGAAAGCAACTCGTTGGCATCGGTGCCGTCGCGAAACTCGGCGGCGCTCTCTCCGGCTTAAACGCCGAAAGCTTGGAGTCAGCGCTTTATATTCTCGACGTTTTGTCGTCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACAGTTAGAAATTTGGTGAAATTGTTGATGAAAGTATCGGAGATTTGTACAAGATTTGCGCTATCGATTTTGTGGGCGGTGTTCAAGCTAGCGCCGGAGGAATGTTCGGTGCTCGCGGTGGAGGCGGGATTAGCGGCAAAATTGCTGCTTGTGATCCAAAGTGGGTTCAATCCAGAACTGAAGCAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCGGATTCTATCTTCATTTCTAAATTGAAGATGGCCAGACTGAAACAAGCTAAAGATGAAGCTGAAAGGGAAGTGGCCCAATATCGTGCCCACATGGAGGCTCAATATCAGAACAAACTCTCTCAGACAAATTCTGGGTCCTATATGCAACGGCTGGAAGATGAAACCAAGGTTAAGATCCAGACTTTGAAAGAATCATCCGAAAGAGTTTCAAAGGATGTTGTTCATATGCTTCTCCAACATGTTGCCTCTCCCAGAATTTAG 1572 48.35 MPIYHPSICTQRDPKLLVDCGAHILDLQTVVKDGILGGGGGGVIATDGGAQKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTAHSSVKKMVVDNGGVALISSLLGSFTSHAVGSEGVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLTEGDASTIENVSSLSLLVGLLRMVKDQRHPNGVTAALTLLRTLCSNESIRKQLVGIGAVAKLGGALSGLNAESLESALYILDVLSSLPEGRLALKNCEDTVRNLVKLLMKVSEICTRFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGFNPELKQRSAELLKLCSLNYPDSIFISKLKMARLKQAKDEAEREVAQYRAHMEAQYQNKLSQTNSGSYMQRLEDETKVKIQTLKESSERVSKDVVHMLLQHVASPRI 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 572674 575897 - CmaCh05G001290.1 Cma05g00129 294247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00129 523 SUPERFAMILY RING/U-box 64 138 - -
Cma05g00129 523 Gene3D - 442 523 - -
Cma05g00129 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 148 IPR013083 -
Cma05g00129 523 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Cma05g00129 523 Pfam Vacuolar (H+)-ATPase G subunit 444 520 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cma05g00129 523 PANTHER WDSAM1 PROTEIN 41 451 IPR045185 GO:0061630
Cma05g00129 523 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 451 - -
Cma05g00129 523 Coils Coil 440 474 - -
Cma05g00129 523 CDD RING-Ubox_PUB 72 114 IPR045210 -
Cma05g00129 523 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Cma05g00129 523 Gene3D - 149 431 IPR011989 -
Cma05g00129 523 SUPERFAMILY ARM repeat 156 437 IPR016024 -
Cma05g00129 523 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00129 Cma09g00301 CCT
Cma01g01775 Cma05g00129 CCT
Cma05g00129 Cma12g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00129 Cma-Chr5:572674 Cma04g00485 Cma-Chr4:2469383 1.11E-36 dispersed
Cma14g00208 Cma-Chr14:895299 Cma05g00129 Cma-Chr5:572674 7.91E-22 dispersed
Cma01g01775 Cma-Chr1:11908140 Cma05g00129 Cma-Chr5:572674 0 wgd
Cma12g00605 Cma-Chr12:3181039 Cma05g00129 Cma-Chr5:572674 0 wgd
Cma05g00129 Cma-Chr5:572674 Cma09g00301 Cma-Chr9:1239658 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00129 - - csv:101211594 746.888