Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00132 ATGGCGCCGAGGGAGGAGGAGGACTCGAGGATGGAGAAGCTCGAATCAGCATGCTCGGATTTGAAAATCCTCCTCCAAGCCTCGACGGGATTGAACGATAGCCTAGAGAGGATGGAGAAGAATCTTGATTCAATCGACGAATCGCTCGCGACAGCGTCGAGAAGCATAATACCTCTACAATCTTTGGCGATGACGACAAAAGCCCTCGAAACGAGAATCAATCGTGCAGCTTCGCCTGCTCTCGTTCTGCTCGATTCCTTTAAGCGATCCGAGTTTCTCCAACGCAAGATTCTCGCGATCTTCGCCAATTTATCGGTGGAAAAATTGGCACAGGAACGTCTGAAGAAGCTGATCAAACTAGTAAACTGTGTGGATAGACTGAATGCATCCATAAGCTTGATTAGCCAAGAGGGGGAATCGGTGATCCAGAAACTTCAAGAGGTGGTAGAGTTCTTGAGTAGGACGAAGGCTGCTGATTCACAGCGGACACACAGACTGAAAGAGACGATGATCACTCTCAAAGCTCTATACGAAACAGAAATTGACGACATGAAGTTTGAGGGGTTGCTTGACGAAGCTTTGCTGAACCTGCAAGATGAATTTGAAAACATATTAAAGAATCTAAAGCGTCAAAGAAAACCCAAGTTTGAAGATGGTGAAGCAGAAAAAGAAGGTGAAGCAGTGGGGTCTGAAATGGGTACCGAGTTGGAGGTCGAAGCTGCCAAACGAATTTCTGAAACCCTCGCTGCCAACGATTGTTTGGATATTTGCATCAATATTTACGTCAAGGTTAGATACAGAAGAGCAGCTACGACATTGATGCGGCTGAATCCAGTCTATCTCAAAACATACACTCCAGAAGAAATTGACAGAATGGAGTGGGAAAAATTGGAGACAGCAATTTCTCTGTGGATTGAACACTTCAAGGTCGCGGCCACGAGCGTGTTGGTTTCCGAGAAGAAACTCTGTAGCCAGGTCTTAGGCTCAATCATGGATGGACTGATGTGGCCTGAATGCTTCGTGAAGATCGCGGACAAAATCATGGCCGTGTTCTTCCGATTTGGGGAAGGCGTCGCCAGAAGTACAAAAGAGCCGCAGAAACTGTTCAAGCTCTTGGACATGTTCGCCTCCATGGAACAACTCAACTCCGAATTCTCTGAGGCATTCGGCGGCGAAGCTGGCACAGAAATTCGCACACGATACAGAGAGCTGGAGAAGCTACTTGTACACGCGTCCAGCAAAGTATTTTGGGACTTCGGCCTTCAAATTGAGGGCAATTCAGATGGCTTTCCTCCTCCAAAAGACGGCTCAGTTCCAAAACTAGTCAGATACGCCGTCAACTACCTCAAATACCTTGCAAGTGACAACTACAGTTTCGCCATGACCAAAGTTCTCCAAATACAGAAATCATGGAAGGGCGGAGTCGTTTTAAAATCGGAAGACGAGGATAATCTCCTCAAAGACGCCTTCTCTAACGTAATGGAAGCCCTACAAAGAAACGTCGAATCCAAAAAATCGCGCTACAGAGACAAAATCCTACCGCATATCTTCTCAATGAACACATACTGGTACATCTACATGCGAATCCGAAACACGGAACTAGGAAGATTTCTAGGAGAACAGTATATGAGAAAGAATTACAAAGCAGTGGCAGAGGAATCGGCTTACACTTACCAAATGCTATGTTGGGAGCCCTTGCTTTCAGTATTGGACATGGAAGACGTGCGATTACCGAACAAGGAAACCGTGGAAGAATTAGCGAAAACAAAAATGGAAGCATTCGTGAAGGCTCTAAGGGAATTCTCACATAAACACGGAACCGCGTATTGCATTCCAGATTTGGATTTGCGGGAGCAGTTGAAAGAGGCAACCCTGAAGATGATACTACCGGCTTACACGGAGTTCTTCAATTTGCACTCGGCTTTGTTGCCGGGGATTGGGAAGTATTATGTGGGCCTAGAGACGATCCATGATTTTGTGGGTCGGGCCTTTGAGTTCGAAAGTGGGAGTGGGAGTGGGAGTGGACCTGGGCCGGGTGGCAAGTTGAAGAGACGGGGTTCAGTGGATCGGATGGCTGAGATATCGTCGGATGGACCAATCTTGGGCGTTTGA 2112 46.97 MAPREEEDSRMEKLESACSDLKILLQASTGLNDSLERMEKNLDSIDESLATASRSIIPLQSLAMTTKALETRINRAASPALVLLDSFKRSEFLQRKILAIFANLSVEKLAQERLKKLIKLVNCVDRLNASISLISQEGESVIQKLQEVVEFLSRTKAADSQRTHRLKETMITLKALYETEIDDMKFEGLLDEALLNLQDEFENILKNLKRQRKPKFEDGEAEKEGEAVGSEMGTELEVEAAKRISETLAANDCLDICINIYVKVRYRRAATTLMRLNPVYLKTYTPEEIDRMEWEKLETAISLWIEHFKVAATSVLVSEKKLCSQVLGSIMDGLMWPECFVKIADKIMAVFFRFGEGVARSTKEPQKLFKLLDMFASMEQLNSEFSEAFGGEAGTEIRTRYRELEKLLVHASSKVFWDFGLQIEGNSDGFPPPKDGSVPKLVRYAVNYLKYLASDNYSFAMTKVLQIQKSWKGGVVLKSEDEDNLLKDAFSNVMEALQRNVESKKSRYRDKILPHIFSMNTYWYIYMRIRNTELGRFLGEQYMRKNYKAVAEESAYTYQMLCWEPLLSVLDMEDVRLPNKETVEELAKTKMEAFVKALREFSHKHGTAYCIPDLDLREQLKEATLKMILPAYTEFFNLHSALLPGIGKYYVGLETIHDFVGRAFEFESGSGSGSGPGPGGKLKRRGSVDRMAEISSDGPILGV 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 585777 587971 + CmaCh05G001320.1 Cma05g00132 294250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00132 703 MobiDBLite consensus disorder prediction 668 703 - -
Cma05g00132 703 Coils Coil 35 55 - -
Cma05g00132 703 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 665 IPR004140 GO:0000145|GO:0006887
Cma05g00132 703 SUPERFAMILY Cullin repeat-like 164 649 IPR016159 -
Cma05g00132 703 Gene3D Exocyst complex component Exo70 140 665 - -
Cma05g00132 703 PANTHER OS08G0519900 PROTEIN 8 665 - -
Cma05g00132 703 Coils Coil 4 24 - -
Cma05g00132 703 Coils Coil 487 507 - -
Cma05g00132 703 Pfam Exo70 exocyst complex subunit 304 641 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00132 - - - cmax:111492476 1358.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00132 Cma-Chr5:585777 Cma05g00623 Cma-Chr5:3128909 2.04E-67 dispersed
Cma05g00132 Cma-Chr5:585777 Cma12g00298 Cma-Chr12:1525123 9.56E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g641 . . . . . . . . Cmo05g00136 . . . . . Sed11g0918 . . Bhi04g00438 Tan02g1722 Cmetu03g1922 . . . Lcy13g2139 Cla08g01629 Cam08g2133 Cec08g1718 Cco08g1840 Clacu08g1819 . Cre08g1602 . . Cone17ag0891 Cone20ag0237 . . . Cme03g02110 . . . . . . . . . . . . Cma05g00132 Car05g00114 . . . . . . . . . . . . . . . . . Lsi08g01534 Csa02g01886 Chy03g01600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00132 Cma_Chr05 FPKM 0.0 0.0 0.151053 0.0 0.079997 0.06207 0.0 0.194163 0.19708 0.220577