Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00135 ATGACGGTCAAACCGTTGGAGTTGCTACCTCCCACAGAAACGTTAGAGATGGAGAGTGGTCTTAAGCTGGTGCCGCGTCTGAGACTCAACTTCACAGTCTATCCGTCGAGCCCTTCAGTGAGTAAATCCCTTGATGAGTGGAAGTTGAAGCGAGCTCTCATTGACTTTCTCAAGACTTCGCTTTCGGTTCCGGTAATTGTCCCTGAGGAGGATTTGGTGATCAAACGCATTAAAGAAGTTAAGACACGCAAGCGCGAAGACCCACTTGCTCGCGGTACTCTCTTCGTGCGAGATCTTGGATTTTTGAAAAGTGCTTACAAGAGGTATGAGGAGGAGGAAGAGGAAATCACGGTGTTGGAGAAGAAGTTTTTGGATTGGAGGCGATTCCTGGTTGAGAAATTGGATGGGATTGAGCTGAATCTTGAGGGGTTCAAATTCAAACTCACAGTCGTTATACCGGAATCTGATAATTTTGAGGCAATGAAGACGGCTTGGGGGGATTTTTACGCATTTGGGAATCGTGGATATTCGAGAAATGGGAACCAAGGACCTGATACCATTACCTTGAGGGGTGCTCCATCAAGGTGGTTTGCCGAGCCTCGGGTTTCGTCAAAGCCCTCCATGTTGGTCACACATACCATCTTTTCTACATTTGGAAAGATAAGGAACCTAAATATTGCTGTCGATGATGCTTTTGGTAAGGACGGCAATGAGGATGCAGAAGACATAATTTCAGGCTTACACTGTAAAATAACAGTTCAGTTTGAGAAACACAGGGACTTTTACAATGCTCTAAAGGTGCTGTCTGGTCGCTCATTGCAGAAGCAAGGATCTCGCCTCTGGGCTGATTATGAGGTTACATGGGACAAGGATGGCTTTACCCAACACTCAAGAAATCCACAACAGGGTGATGGCAGCAGAATGCAGGAAATGGCAGCAGGGCAATTTAAGAGTGAGGCCTTGAGAAGACAACGATATTCTGGCTCCATTCCTGATGATTCACGGCGCAAGAGGTTCAAGGAATAG 1026 46.39 MTVKPLELLPPTETLEMESGLKLVPRLRLNFTVYPSSPSVSKSLDEWKLKRALIDFLKTSLSVPVIVPEEDLVIKRIKEVKTRKREDPLARGTLFVRDLGFLKSAYKRYEEEEEEITVLEKKFLDWRRFLVEKLDGIELNLEGFKFKLTVVIPESDNFEAMKTAWGDFYAFGNRGYSRNGNQGPDTITLRGAPSRWFAEPRVSSKPSMLVTHTIFSTFGKIRNLNIAVDDAFGKDGNEDAEDIISGLHCKITVQFEKHRDFYNALKVLSGRSLQKQGSRLWADYEVTWDKDGFTQHSRNPQQGDGSRMQEMAAGQFKSEALRRQRYSGSIPDDSRRKRFKE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 592906 596868 - CmaCh05G001350.1 Cma05g00135 294253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00135 341 PANTHER A KINASE (PRKA) ANCHOR PROTEIN 17A 12 340 - -
Cma05g00135 341 PANTHER B-LYMPHOCYTE ANTIGEN-RELATED 12 340 - -
Cma05g00135 341 MobiDBLite consensus disorder prediction 293 308 - -
Cma05g00135 341 Coils Coil 102 122 - -
Cma05g00135 341 CDD RRM_AKAP17A 182 293 - -
Cma05g00135 341 MobiDBLite consensus disorder prediction 292 341 - -
Cma05g00135 341 MobiDBLite consensus disorder prediction 326 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00135 K13169 AKAP17, SFRS17; A-kinase anchor protein 17 - csv:101209693 597.045
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g645 . . . . . . . . . . . . . . Sed10g1171 . . Bhi04g00434 Tan02g1725 Cmetu03g0164 . . . . . . . . . . . Cone4ag1617 Cone7ag1331 . . . . . Cme03g02107 . . . Bda01g01624 . . . . . . . . Cma05g00135 Car05g00116 . Cpe11g00116 . . . . . . . . . . . . . . . . Csa02g01889 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012528 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00135 Cma_Chr05 FPKM 11.257353 13.02348 11.589868 12.183228 24.250542 25.657011 22.249195 17.020063 17.718529 17.513693