Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00137 ATGGCGTTAATTCCCATAATAAAGAGAATATTAGGGAGCGATTGCCGAATGACGATGGTTCACTTCATACAGTTCTTGACTTTTCTTCAAGCTAGAGTTAGAGAATTGAAGAAGAGCGGTCACTCTAGTCATGCCACCACGATGATGCTTGTTGGAATTCCAAATGTTGGTAAGTCGGCCCTTGCCAACTCTCTGCATCAAATTGGGAGAATTAGTGCAGCAGAAAAAGGGAAGTTGAAGAATGCTATAGTGAGTCCGCAGCCTGGTGAAACAAAAAATATCAGCAGCTTGAAGATAGCTAGTCATCCCAATATTTATGTATTAGACACCCCTGGAATTTTTCCTCCCAAGATTCTCAACATCGAGGTCTGTTCCAAGCTTGCTTTAACAGGGGCAATTAGAGACATTTTAGTCGGGGAACAAGTACTAGTACAGTTCCTTTTAACTCTTATCAACTCAAGTGATAAATATAAGAAGTGGGGAAATTTGTCTGCCACGGACAGCTTGTTGGAGTGTTCAACTTGCTCAAGTTTAGAGAAACGGAAAAGGGGGTATCCGTCTGATCATACGCAGGACATTATTGTAAATGATGTTCGTAGAATTCTCTTTGAGACCATTTCCACTTTTGATGGTAATTTGGAGGATAAAAAGGGCATGGGAAATCTTATTGAGACACAATTGCTTGCTCTGCACAAAGCTTTGCACGTTCCTATGGGTTTTGACAATGATTCTCCTATCAAGGGATTACTCATTACGCCCATTCGATTCAATCTGACAGGTGGAATATCACGTGCTGTTCATCCTCTGGCTGGTGTTGGCTGCTCCACTGTTTGGAAGGCACTTGGAATTAAACTAATAGGAGAGCAATTCAAGTTTGAAGAGCCACCACAGTCCCCGGAGTCACTAGCGACGAGGGATTTCTCGGCCAGTTGTCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAAAGAAGCTCTCTCATTAAACTACGAGGAAGCCAGAGCTTTACTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGTATAGGCATTAGATCCTTGACGCCAAGAATGGTTAAGGCAATCACCGAAAAGATAAGAGAGGAAAAACCTCGTCCTAAAGGTGACAGTGCCCCCCCTACTGGTGTACTGTCCATGCATTCTGTTAGCCTACTACTTGAAGCAATTCTACTCAAGGCAAAATCACTGGAGGAACTTGGCAGATATATAGAGTCTGCGAAAGAATGCAGGATAATTCTTGATACAGTGGAATCAGCTTTGCCTAATGGAATGCCCGAGTTTATTGGGGAAGACTGCAAATTTCAGGAAATGTTACACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGTGGTTATCTTGACGAGGCCATAAACGCCTACCGCAGAGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATAGAGAAAGAATTGGCTGGCACATTACTCTACGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTTATGTATTCGGTCCAAGAACACCTAAAAATAATGTAGAAGAAGCAATCCTTTTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCAGAGATTATGAATCATCTGACTTTTGCACTTTCTATCACAAGACAGTTTGAATTATTGGCTGAGCACGTGGAGCAGATTCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCGGCAGGACAGAATGAAACAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCAGAAGCCCCATTTTCATTCATTTTTGTTGCTTGCAAAATTGTGTTCAGAGGATACAAAATATGCACGTGATGGAATAAAATGTGCTAGTAGAATGATCGATATGGCCAGTGAACACAGTAAACATTTCAATGCTGAATCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCAAGAGCTTCTGTATCAGACTCTGAAAGAGCTCTTTTCCAAAAAGAATCATTGAACTCCCTAAGAGTTTCTTCTCTCGGTAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCTTGATGCTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTCTCAGCTGAGAGGCGACTCAAGGACGCTGAAACCATAGTTGATTTTGCTTTGGACGAAGCTGAGAGGATGGATCAATTGGAATTTCTTCGATTGAAAGCTGTCCTCAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTAGCACTAATTCAAGCACGAGATGAACTTCAGCTTCAGGCTACGAACCTTAACCAATCCAAGGACTTGGAACTAGAGGCAGCGGCAGAACGTGCCTTAGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATTTGCCTGAACAAAGCCAGAACATTAAATCTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAGGCTCGATCGTTATACAAGGAAGCACTTGTTTCATACTCTCTCTCTCTATCGGTTGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTCTCCAAAATGGAAGGTTTGTTGCTTCAAGCTGCAGATTTTTTTCAAGCCGCACATGAACTCCAATTATCAGCTCCTCCTCAGAGTTTCATCTAA 2991 42.46 MALIPIIKRILGSDCRMTMVHFIQFLTFLQARVRELKKSGHSSHATTMMLVGIPNVGKSALANSLHQIGRISAAEKGKLKNAIVSPQPGETKNISSLKIASHPNIYVLDTPGIFPPKILNIEVCSKLALTGAIRDILVGEQVLVQFLLTLINSSDKYKKWGNLSATDSLLECSTCSSLEKRKRGYPSDHTQDIIVNDVRRILFETISTFDGNLEDKKGMGNLIETQLLALHKALHVPMGFDNDSPIKGLLITPIRFNLTGGISRAVHPLAGVGCSTVWKALGIKLIGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIGIRSLTPRMVKAITEKIREEKPRPKGDSAPPTGVLSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPEFIGEDCKFQEMLHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIEKELAGTLLYGGVEASLPLKFYVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTFALSITRQFELLAEHVEQILPGIYSRAERWYFLALCYNAAGQNETALNLLMKVCGSSEVKQKPHFHSFLLLAKLCSEDTKYARDGIKCASRMIDMASEHSKHFNAESHKFLGVCYGNAARASVSDSERALFQKESLNSLRVSSLGRRHDPEVMFNISLENAVQRNLDAAFYSAMAYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEAERMDQLEFLRLKAVLKIAQEQPKQAIETYRILLALIQARDELQLQATNLNQSKDLELEAAAERALERAAWQDLAAIYSKLASWADAEICLNKARTLNLHCPRGWHTTGKYFEARSLYKEALVSYSLSLSVDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPPQSFI 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 598929 607361 - CmaCh05G001370.1 Cma05g00137 294255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00137 996 Pfam 50S ribosome-binding GTPase 48 154 IPR006073 GO:0005525
Cma05g00137 996 Gene3D Tetratricopeptide repeat domain 299 525 IPR011990 GO:0005515
Cma05g00137 996 Coils Coil 765 785 - -
Cma05g00137 996 PANTHER PROTEIN NPG1 287 995 IPR043376 -
Cma05g00137 996 Gene3D Tetratricopeptide repeat domain 823 993 IPR011990 GO:0005515
Cma05g00137 996 SUPERFAMILY TPR-like 791 968 IPR011990 GO:0005515
Cma05g00137 996 Gene3D Tetratricopeptide repeat domain 538 822 IPR011990 GO:0005515
Cma05g00137 996 Gene3D - 13 117 IPR027417 -
Cma05g00137 996 SUPERFAMILY TPR-like 588 826 IPR011990 GO:0005515
Cma05g00137 996 PANTHER PROTEIN NPGR1 287 995 - -
Cma05g00137 996 SMART tpr_5 887 920 IPR019734 GO:0005515
Cma05g00137 996 SMART tpr_5 853 886 IPR019734 GO:0005515
Cma05g00137 996 SMART tpr_5 598 631 IPR019734 GO:0005515
Cma05g00137 996 SMART tpr_5 792 825 IPR019734 GO:0005515
Cma05g00137 996 SMART tpr_5 957 990 IPR019734 GO:0005515
Cma05g00137 996 Coils Coil 336 356 - -
Cma05g00137 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 127 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00137 Cma-Chr5:598929 Cma19g00105 Cma-Chr19:634173 1.08E-176 dispersed
Cma05g00137 Cma-Chr5:598929 Cma14g01828 Cma-Chr14:13064593 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00137 K21843 - csv:101209448 1268.83