Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00141 ATGGGGACGGAGAATCCCGTCAATTTTGCATACATGGGGCGGAGCTTTGATGATCTCACCAACGGCGATAGTTCTGGGGCTTTTAGCGACTGTAACAGCGATAGATCCGGGGAGTTCCCGATGGCGTCGTCCCAGAGTCGCCGCCTTTTGATTTCTTGTGCATCTGATAACTCCGACGAGCTAATTCAGCAGCTGGTGTTGGACCTCGAGTCCTGTTCGATTGACGAGCAGAAACAGGCGGCCATGGAGATCAGACTCCTCGCCAAGAACAAACCCGAGAATCGATTAAGGATCGCGAAAGCCGGTGCGGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATCTGTCGCTGAACGACGAGAACAAGGAGCTGATAGCAGCGTCTGGTGCGATTAAGCCTCTGGTTAGAGCTCTCATGTCCGGAACTTCGACGGCGAAGGAGAACGCCGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCAGGAGCGATTCCACTTCTGGTGAATCTATTGGGCAACGGTGGCTTTCGCGGAAAGAAGGATGCATCGACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCCGATTTCGGGTCAAACATGGTGGACAAGTCAGCGTTCGTGTTGAGCGTGTTGGTATCGATGTCGGAGGCAAGAACGGCTCTGGTAGACGAGGGCGGAATCCCAGTACTGGTGGAATTAGTGGAGGACGGAACGCAGCGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGAAAGTGTCCTTTACCGTACAATGGTAGCTCGTGAAGGAGCAATTCCACCGCTAGTCGCCTTGTCACAGTCTGGCACGAATCGCGCCAAGCAAAAGGCGGAGAAACTGATAGAGCTGCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAAATGTGTGTGTCTAA 1059 53.45 MGTENPVNFAYMGRSFDDLTNGDSSGAFSDCNSDRSGEFPMASSQSRRLLISCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQEYGVTAILNLSLNDENKELIAASGAIKPLVRALMSGTSTAKENAACALLRLSQMEENKIAIGRSGAIPLLVNLLGNGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSMSEARTALVDEGGIPVLVELVEDGTQRQKEIAAVILLQICEESVLYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNYAATTSNVCV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 628954 631289 + CmaCh05G001410.1 Cma05g00141 294259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00141 352 PANTHER U BOX DOMAIN-CONTAINING 1 345 - -
Cma05g00141 352 Pfam Armadillo/beta-catenin-like repeat 132 171 IPR000225 GO:0005515
Cma05g00141 352 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515
Cma05g00141 352 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515
Cma05g00141 352 Gene3D - 39 197 IPR011989 -
Cma05g00141 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515
Cma05g00141 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 185 IPR000225 GO:0005515
Cma05g00141 352 Gene3D - 201 350 IPR011989 -
Cma05g00141 352 SUPERFAMILY ARM repeat 59 333 IPR016024 -
Cma05g00141 352 SMART arm_5 214 254 IPR000225 GO:0005515
Cma05g00141 352 SMART arm_5 132 172 IPR000225 GO:0005515
Cma05g00141 352 SMART arm_5 255 295 IPR000225 GO:0005515
Cma05g00141 352 SMART arm_5 91 131 IPR000225 GO:0005515
Cma05g00141 352 SMART arm_5 297 337 IPR000225 GO:0005515
Cma05g00141 352 SMART arm_5 173 213 IPR000225 GO:0005515
Cma05g00141 352 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00141 - - - csv:101208714 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00141 Cma12g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00577 Cma-Chr3:5244077 Cma05g00141 Cma-Chr5:628954 2.26E-93 dispersed
Cma05g00141 Cma-Chr5:628954 Cma07g00350 Cma-Chr7:1505641 4.69E-94 dispersed
Cma20g00690 Cma-Chr20:3157005 Cma05g00141 Cma-Chr5:628954 5.18E-35 dispersed
Cma12g00597 Cma-Chr12:3115717 Cma05g00141 Cma-Chr5:628954 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00141 Cma_Chr05 FPKM 21.903103 25.032507 8.245007 11.148694 7.97907 7.267438 7.223892 16.064161 15.59626 17.54459