Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00143 ATGGAGGCTTTGGGAGGTTTTTCGGATGGGGAATGGGAGCCTTTCGCCGCCATGTTCTCATCGGAGGAGGTAGATCAGTCCCATATTCCGATCGCGAATCATGCCGATCCTTCCACTGAGCTTCAATTGCCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGACGCTTTTGTTCCCAATTTGCAGAGTTATTGCGTCAAACAGGACACGAGGAGCTGCAGTAGCTGCATTACTACTGATAATTCCCATGCTGCCTTTTTGTTTCCCAATTCTACTGATTTCTTTACGCCAATTGACGAGGGGAATTTTGGGTCCTCGTGGTTTTCTGATGTTTTAATCGAGGAAGTGGATAAGGCTCTCTACACCGCCGCCACCGGTGAAGACTCCAGCACTGAGAGATTCGTCGAGATTAATGTAGTACAAGGTAACTACCCAGCACTGCCGCCGCCATCGCAGCTCGTAGATTCCACTGGTGCCGCGAAGGAACCAATGGCACTGAAAAGGAAAGTCAATAACGAAGATATTTCTGATAATCAGAAGAAGAAAACTCGGGTTTCAGCAGATGGGCAGAAGAAGAAGAAAACAGAGGAAAGAAAGAAAAATGAGAAGAGAAAAGGGAAGAGTGTGGAAGAAGAAGGCAATGCGGGTGGAGCATCAGAAGGGCAGTGCTCCATTAGTTACAGTTCCGATCAGGAAGAAAATGGTTCACAGGAGGGCCAAGGCGCCACCTCCGACGGCGGCTTGATCAGGAAGGGCAGAGCAAGCAGAGGGTCGGCCACAGATCCCCAAAGCCTGTACGCTAGAAAACGAAGGGAGAGAATCAACGAGCGATTAAGAATGTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCAGTACGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTGTGGATGTTTGCTCCTTTGGCATACAATGGATTGGAGCTTGGGCTTCACCAGAAGCTCTCTCCATTTGGGTCACATTGA 1038 48.17 MEALGGFSDGEWEPFAAMFSSEEVDQSHIPIANHADPSTELQLPNNGGSSWFYSLDAFVPNLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNFGSSWFSDVLIEEVDKALYTAATGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQKKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEGQGATSDGGLIRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDELWMFAPLAYNGLELGLHQKLSPFGSH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 640612 642014 - CmaCh05G001430.1 Cma05g00143 294261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00143 345 CDD bHLH_AtIND_like 260 322 - -
Cma05g00143 345 MobiDBLite consensus disorder prediction 220 244 - -
Cma05g00143 345 MobiDBLite consensus disorder prediction 167 212 - -
Cma05g00143 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 342 - -
Cma05g00143 345 Pfam Helix-loop-helix DNA-binding domain 269 309 IPR011598 GO:0046983
Cma05g00143 345 Coils Coil 193 213 - -
Cma05g00143 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 320 IPR036638 GO:0046983
Cma05g00143 345 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 5 342 - -
Cma05g00143 345 SMART finulus 265 314 IPR011598 GO:0046983
Cma05g00143 345 MobiDBLite consensus disorder prediction 167 268 - -
Cma05g00143 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 308 IPR011598 GO:0046983
Cma05g00143 345 Gene3D - 261 322 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00143 - - - cmax:111491997 668.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00143 Cma09g00285 CCT
Cma05g00143 Cma09g00285 ECH
Cma05g00143 Cma12g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00143 Cma-Chr5:640612 Cma16g00324 Cma-Chr16:1521773 2.47E-55 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma05g00143 Cma-Chr5:640612 8.94E-53 wgd
Cma12g00596 Cma-Chr12:3109902 Cma05g00143 Cma-Chr5:640612 3.62E-100 wgd
Cma19g00554 Cma-Chr19:6318015 Cma05g00143 Cma-Chr5:640612 7.39E-52 wgd
Cma04g00451 Cma-Chr4:2305604 Cma05g00143 Cma-Chr5:640612 8.50E-52 wgd
Cma05g00143 Cma-Chr5:640612 Cma09g00285 Cma-Chr9:1167219 1.69E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g659 Blo01g01498 . Bda01g00587 . Bpe02g00449 . . Bma01g02249 Cmo05g00146 . . Cma09g00285 . . Sed05g2626 Cpe06g00195 Cpe07g00514 Bhi04g00411 Tan02g1022 Cmetu01g0392 . Hepe08g1329 . Lcy13g2130 Cla08g01617 Cam08g2119 Cec08g1704 Cco08g1827 Clacu08g1804 . Cre08g1586 . . . . Lsi04g01492 Csa04g02472 . Cme03g02098 Blo17g00860 Blo18g00720 . Bda01g01589 Bpe02g01776 Bpe05g00472 . Bma05g00057 Sed13g1799 . . Cma12g00596 Cma05g00143 Car05g00125 Car09g00239 Cpe11g00124 . Bhi09g03235 Tan01g4705 Cmetu07g1689 . Hepe01g1823 Mch11g0358 . Cla05g02102 Cam05g2254 Cec05g2274 Cco05g2315 Clacu05g2250 Cmu05g2113 Cre05g2237 Lsi08g01523 Csa02g01899 Chy07g00184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010548 1 1 2 2 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35019 PF00010 HLH 1.30E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00143 Cma_Chr05 FPKM 1.963311 1.802474 0.0 0.0 0.0 0.0 0.324527 0.0 0.0 0.0