Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00155 ATGAAGTTCCTTCACCTTCTTTCAATAATTCTCGTTCTCACCTCCTTCCTCCAGCTCTCCCTGGCTGCCCCAGGTTTTTGCAGTTCGAAATGCGGAAGTAGATGTGCAAAAGCAGGGGTGCAGAATCGGTGCTTGAAGTACTGCGGGATATGCTGCGAGAAATGCGGGTGTGTGCCGTCTGGGACTTATGGGAACAAGCATGAGTGCCCTTGCTATGGGCAGATGAAGAACTCCAAGGGGAAGTCCAAGTGTCCTTAA 258 50.78 MKFLHLLSIILVLTSFLQLSLAAPGFCSSKCGSRCAKAGVQNRCLKYCGICCEKCGCVPSGTYGNKHECPCYGQMKNSKGKSKCP 85
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 678036 678878 + CmaCh05G001550.1 Cma05g00155 294273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00155 85 PANTHER GIBBERELLIN-REGULATED PROTEIN 10 5 85 - -
Cma05g00155 85 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 5 85 - -
Cma05g00155 85 Pfam Gibberellin regulated protein 26 85 IPR003854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00155 - - - csv:101206381 161.384
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00155 Cma-Chr5:678036 Cma09g00103 Cma-Chr9:455522 1.16E-15 dispersed
Cma18g00149 Cma-Chr18:762977 Cma05g00155 Cma-Chr5:678036 6.66E-11 dispersed
Cma11g01714 Cma-Chr11:11348135 Cma05g00155 Cma-Chr5:678036 2.63E-18 wgd
Cma05g00155 Cma-Chr5:678036 Cma07g00673 Cma-Chr7:2946527 2.08E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g681 . . . . . . . . Cmo05g00156 . . . . . Sed10g1973 . . Bhi04g00396 Tan02g1765 Cmetu03g1936 . Hepe08g1317 . Lcy13g2120 . . . . . . . Cone4ag1605 . . . . . . . . . . Bda01g01598 Bpe02g01785 . Bma01g00670 . . . . . Cma05g00155 Car05g00135 . Cpe11g00131 . . . . . . . . . . . . . . . Lsi08g01510 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001419 2 3 0 2 2 3 2 3 3 1 3 3 2 3 2 2 3 2 2 3 3 3 2 0 3 3 3 2 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00155 Cma_Chr05 FPKM 1.61178 2.602344 9.048655 8.05426 18.165646 14.626438 16.041136 8.092088 7.086727 7.695696