Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00163 | ATGACTTATGAGGGCACATTGATAGCTGGAATTATTGTAGGTTTGGACTGTGATCTCCACCGGATTGCAGTCCCGCATAACTTTATATATGTGATGTTTTTGTTGTACTGGTTCTGGATTGTCATGATAATTCTGAAGGGAAAGGAATGGGTTGTCAACTCATTTCTCATCATCGTGTTTCGTAGACTTTTGAAGAAGATGGTACCACCGTATGCGCTTGATGCTCTTTATTGCTCTGAGGAGCACTGGGAGGAGGACGACAACGAGGAAAGGGGTTTTCACCACCAACCTTACTCTACTTTAACAACCGATTCAACTTCTCCGATTTTGGCTGAGCAGGATCTGTTTTGGGATGACCATGAACTAATTTCTCTGCTTTCAAAAGAGAGGCCTAATGAACTGTTTAAAAGCATTCAGATTGACCCTTCTCTTGCTGCCGCCCGACGACGTGCCGTCGACTGGATGCTGAAGACCACTGCCCATTACTCCTTCTCAGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGACCGGTTTCTGTCCTGTTTTCATTTTCAAACAGACAAGCCGTGGATGTCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAACCAAGACCATTAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTGAATGGCGGATGAATCCTGTCACCCCATTTTCATTTGTGGATTATATTTCAAGGAGACTGGGATTCAAGGACCATATCTGCTGGGAAATCCTTAGGCAGTGTGAACGAACTGTTCTCTCGGTTATCTTAGACTCGGATTTCATGTCGTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGCTTTTAAAGCTATGAAGCCCCACTTCGGCATCGAATACGATTCCCAGCTTCTTACCATCCTTGGAATCGAAAAGGGAAATGTGGAGGAATGCTGTAAGCTGATCTCAGATGCATCTAGAAGAAACGGCAATCAATTTAAGAAACGTAAATTCGGGTCAATTCCGGGCAGCCCGAACGGCGTGATAGACGTGTCATTCAGCTCGGATAGCTCGAATGAGTCGTGGTCAGTGGCCTCGTCGGTTTCATCTTCGCCAGAGCCTTCAACGAAGAAGAGCAGATCAATGGATCATCTGCCTCTGGAGATGGCGAATCATTCAACAGCTACAAATTGCCTCGACATGTCCTCGCCTGAACCCTCTCTTAATTAA | 1284 | 46.11 | MTYEGTLIAGIIVGLDCDLHRIAVPHNFIYVMFLLYWFWIVMIILKGKEWVVNSFLIIVFRRLLKKMVPPYALDALYCSEEHWEEDDNEERGFHHQPYSTLTTDSTSPILAEQDLFWDDHELISLLSKERPNELFKSIQIDPSLAAARRRAVDWMLKTTAHYSFSALTAVLAVDYLDRFLSCFHFQTDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFETKTIKKMELLVLSTLEWRMNPVTPFSFVDYISRRLGFKDHICWEILRQCERTVLSVILDSDFMSFLPSVMATATMLHAFKAMKPHFGIEYDSQLLTILGIEKGNVEECCKLISDASRRNGNQFKKRKFGSIPGSPNGVIDVSFSSDSSNESWSVASSVSSSPEPSTKKSRSMDHLPLEMANHSTATNCLDMSSPEPSLN | 427 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 698112 | 701545 | - | CmaCh05G001630.1 | Cma05g00163 | 294281 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00163 | 427 | PANTHER | CYCLINS | 101 | 398 | IPR039361 | - | |
| Cma05g00163 | 427 | SMART | cyclin_7 | 153 | 241 | IPR013763 | - | |
| Cma05g00163 | 427 | PANTHER | CYCLIN D3.1 PROTEIN | 101 | 398 | - | - | |
| Cma05g00163 | 427 | MobiDBLite | consensus disorder prediction | 375 | 394 | - | - | |
| Cma05g00163 | 427 | CDD | CYCLIN | 148 | 240 | IPR013763 | - | |
| Cma05g00163 | 427 | Pfam | Cyclin, C-terminal domain | 250 | 354 | IPR004367 | - | |
| Cma05g00163 | 427 | Gene3D | - | 249 | 338 | - | - | |
| Cma05g00163 | 427 | SUPERFAMILY | Cyclin-like | 141 | 248 | IPR036915 | - | |
| Cma05g00163 | 427 | SUPERFAMILY | Cyclin-like | 251 | 348 | IPR036915 | - | |
| Cma05g00163 | 427 | MobiDBLite | consensus disorder prediction | 375 | 427 | - | - | |
| Cma05g00163 | 427 | SMART | Cyclin_C_2 | 250 | 375 | IPR004367 | - | |
| Cma05g00163 | 427 | Pfam | Cyclin, N-terminal domain | 138 | 248 | IPR006671 | - | |
| Cma05g00163 | 427 | MobiDBLite | consensus disorder prediction | 408 | 427 | - | - | |
| Cma05g00163 | 427 | ProSitePatterns | Cyclins signature. | 148 | 179 | IPR006671 | - | |
| Cma05g00163 | 427 | Gene3D | - | 133 | 248 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01813 | Cma05g00163 | CCT | |
| Cma05g00163 | Cma09g00261 | CCT | |
| Cma01g01813 | Cma05g00163 | ECH | |
| Cma05g00163 | Cma09g00261 | ECH | |
| Cma05g00163 | Cma12g00567 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00163 | Cma-Chr5:698112 | Cma16g00347 | Cma-Chr16:1632612 | 7.29E-105 | dispersed | |
| Cma01g01813 | Cma-Chr1:12047797 | Cma05g00163 | Cma-Chr5:698112 | 1.17E-95 | wgd | |
| Cma11g01728 | Cma-Chr11:11487243 | Cma05g00163 | Cma-Chr5:698112 | 4.54E-71 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma05g00163 | Cma-Chr5:698112 | 2.65E-165 | wgd | |
| Cma19g00585 | Cma-Chr19:6507822 | Cma05g00163 | Cma-Chr5:698112 | 9.88E-76 | wgd | |
| Cma04g00476 | Cma-Chr4:2429635 | Cma05g00163 | Cma-Chr5:698112 | 4.66E-94 | wgd | |
| Cma05g00163 | Cma-Chr5:698112 | Cma07g00683 | Cma-Chr7:3002281 | 4.49E-93 | wgd | |
| Cma05g00163 | Cma-Chr5:698112 | Cma09g00261 | Cma-Chr9:1092895 | 3.18E-109 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00163 | K14505 | - | csv:101205442 | 514.227 |