Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00164 ATGGAGTTTTTTGGAATGGATTTCACCTGTGTTTTCGGAGCTCTAAACCACGGCAAGTTCCCGGAGAAAGATTGCTTGCTACCCCTCATCTCTAAGCTTCTCGGCTATTGCATTGTCGCCGCTTCAACCACCGTCAAACTTCCTCAGCCTATTGGTATGAAAACGTGGATCAGAGCGTTACTATATTGTGCTCTAGCGCCAACAGTTCTAGCCGGTCAGATTAATCCTGCTCTCTTTGAAGCTCTTTACGCAAGTCTCATATTTTTACTGTCTGTCACTAATGTATTTGTTCATTCCTCGAAGAAGTTTTTCTCTTCTCGAGGATCCCTCAAATATGGAAGAACTTTTCTTACTCATTCAAAAAAAAAAGTAATCCTCTGTAATGAACAAAAGTTCTGGGAGCTTAGCCTTTTAACATCCATGATGAACTTTGGAGGTTCTATGGTGAGGGTTTTCACCAGCATACAAGAAAACGCACCAAGCAGTGTTCTCTTGGGATCGGCATTTTCCATTGTGACACACAGTACCATTTTGAGTCGGATAATTGTATACCAGAAGAGGGATGTAAAGAAAGAGAAGAAAACAGAGTAG 591 41.62 MEFFGMDFTCVFGALNHGKFPEKDCLLPLISKLLGYCIVAASTTVKLPQPIGMKTWIRALLYCALAPTVLAGQINPALFEALYASLIFLLSVTNVFVHSSKKFFSSRGSLKYGRTFLTHSKKKVILCNEQKFWELSLLTSMMNFGGSMVRVFTSIQENAPSSVLLGSAFSIVTHSTILSRIIVYQKRDVKKEKKTE 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 701691 704213 - CmaCh05G001640.1 Cma05g00164 294282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED 133 191 IPR016817 -
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED 49 91 IPR016817 -
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1 2 49 - -
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED 2 49 IPR016817 -
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1 133 191 - -
Cma05g00164 196 PANTHER MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 PROTEIN HOMOLOG 1 49 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00164 K09660 MPDU1; mannose-P-dolichol utilization defect 1 - csv:101205200 196.052
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00164 Cma12g00566 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00566 Cma-Chr12:2952709 Cma05g00164 Cma-Chr5:701691 6.02E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g723 . Blo12g00968 . Bda03g00200 . Bpe04g00171 Bma04g00154 . Cmo05g00164 Cmo12g00509 . . . Car12g00527 Sed10g1222 . Cpe07g00497 Bhi04g00380 Tan02g1785 Cmetu03g2047 . Hepe08g1302 . Lcy13g2101 Cla08g01589 Cam08g2088 Cec08g1669 Cco08g1801 Clacu08g1774 . Cre08g1558 Cone4ag1595 Cone7ag1353 . . . . . Cme03g02069 . . . Bda01g01601 Bpe02g01791 . Bma01g00664 . . . . Cma12g00566 Cma05g00164 Car05g00141 . Cpe11g00138 . . . . . . . . . . . . . . . Lsi08g01494 Csa02g01927 Chy03g01562 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003947 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00164 Cma_Chr05 FPKM 0.559282 0.0 1.896595 3.3123 10.090185 10.455708 10.697099 4.318743 5.416469 4.723571