Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00171 ATGCGATTCTTCACCATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACAACAACAGCACCACCACCACCAACAACAACAACAACATCCCTCCTCCTCCTCCGATCATAACACTACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCATAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGACGGCAGTGGAGACACATCCCGGGGGGACGCGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCACATCACTGCCCAGCTGGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAGAACCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACTCCTCCTCCTCCCATCCTCCCCACCTTCCACCCTTCTTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTGGTAGAACATAACGGTATATTGTGTAAAAAGGAGGACGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA 750 52.93 MRFFTMGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQQHHHHQQQQQHPSSSSDHNTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECLVEHNGILCKKEDGDRTLELFPLHPEGR 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 722174 723266 + CmaCh05G001710.1 Cma05g00171 294289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00171 249 PANTHER WUSCHEL-RELATED HOMEOBOX 4 10 249 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cma05g00171 249 MobiDBLite consensus disorder prediction 91 120 - -
Cma05g00171 249 ProSiteProfiles 'Homeobox' domain profile. 110 175 IPR001356 GO:0003677
Cma05g00171 249 SMART HOX_1 112 179 IPR001356 GO:0003677
Cma05g00171 249 SUPERFAMILY Homeodomain-like 111 181 IPR009057 -
Cma05g00171 249 Pfam Homeodomain 115 174 IPR001356 GO:0003677
Cma05g00171 249 Gene3D - 114 181 - -
Cma05g00171 249 CDD homeodomain 115 176 IPR001356 GO:0003677
Cma05g00171 249 MobiDBLite consensus disorder prediction 37 64 - -
Cma05g00171 249 MobiDBLite consensus disorder prediction 173 194 - -
Cma05g00171 249 MobiDBLite consensus disorder prediction 77 120 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00171 Cma12g00562 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00171 Cma-Chr5:722174 Cma13g00993 Cma-Chr13:7684742 2.38E-30 dispersed
Cma12g00562 Cma-Chr12:2933794 Cma05g00171 Cma-Chr5:722174 1.57E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35023 PF00046 Homeodomain 1.10E-18 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00171 - - cpep:111805075 413.305