Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00173 ATGCAAGGGCAAAGGAGTAGTGTCGGTTCATTGTCAGAAACAATAAATTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGTATACCAGATTATTTATTGCCTACTTCTGATGTAAATTCTGGATATGTAAGCTCTGTAAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGATGTGCTGCCTGATGGGCAGAAAGCTGAGCTTGGATGGTCTTCAGTGACTCGTGATGCAGATGGTCCCTTCACCGAAAACCAACTCTGTGAGCCATCAAATAATCCTTCACTGGGTCATGTGAATTTGAGCCCACTGATTATACAAAATTCTAATTCTAATAGTATTCCTCATACTCTGAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAGTAGCAGAGTTAACGAAGGTACTGACGTGTATAAATCTAGTGGATCAGAAGAAGGGGGGATTTTATGTTCCAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAGTAGTGGACTTCCAATGCTTGCAAATGATGGTAGAGCAGGCTCTTCCTTGGAAGGTCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGCGGAAGCAGTAGCTACTCTCAGCATATTGAAAGGGGTGCTGAGCCCCCTCTTCCAGCATTACCTGGTCGCTACAACACAGGAAGTAGGTTAAGCATACCTGCTCCACTAGCACGAATGAATCAAGCCCCTATACGAGGTACAGGTGAATTGATGTCCAACAGCTTCTCTGAGTCGATTGTTGTGGAAAACTCAGACAGTTCTCAAAGAAACTATCGTATACGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGGTAGGAACTGTTGTTAGGCATCCTGGGGCCCCATCTTCCCAGCCGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCAGCAGCTGTAGACAATTTATCTACTCAAGGTCAGCCTATTATGATACACGTGCCTGCTTTATCTCGAAGTCTGCAGCCATATAGGTGGATTAGAAGTTCTACTTCAAGAAGTGGTAATTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAGGAGGTGAGACCAAACAACATGGGAAGAAACGTATCTGAACATCCTATGTTTGTCCCAGGAAATGAGCTGAGGAATATGGTTCAAAATCAATCAAGTAGAGGTTTAACATCTTCGAGCTTGCCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAATTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAAAGTTCTCCGACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCAACAAATGAGTCTGGGGGAAGGATAAATAATTATTCACAGCGATCAGGTTCTACTTTGGCTCAGGATATGGTTCTTTCATCTGGATCTGATCGCCGGGGGAACCATTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGACAGTGGACTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCTAATGAAGGAAGTGACAACAATAGACTTGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATGTATGATAGGCACAGGGATATGCGTCTGGACGTTGATAACATGTCATATGAGGAATTGTTGGCATTGGAAGAGCGTATCGGAAATGTCAACACAGGACTAAGTGAGGAGACGATAGTTGGTCGACTGAAACAAAAGAAGCATGTGAATGCTGTTGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGACGACATGGGAACACTGGAATGCGGGCACAATTTCCACACGGATTGCATTAAGCAGTGGTTGATGCAGAAGAATCTGTGTCCCATCTGCAAAACAACTGGCATAGCAAGCCGAGAATGA 2136 44.43 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDVNSGYVSSVSHEQRSLSRWSLGEPSSCDMQTDVLPDGQKAELGWSSVTRDADGPFTENQLCEPSNNPSLGHVNLSPLIIQNSNSNSIPHTLNLNASFASHGGDSSRVNEGTDVYKSSGSEEGGILCSSASDPLLLPSGSSGLPMLANDGRAGSSLEGRRAPCKRKSIEGNVAQSSLSGSSSYSQHIERGAEPPLPALPGRYNTGSRLSIPAPLARMNQAPIRGTGELMSNSFSESIVVENSDSSQRNYRIRISSSNAQDSFASVGTVVRHPGAPSSQPPARLLPAEHVLDLRPAAAVDNLSTQGQPIMIHVPALSRSLQPYRWIRSSTSRSGNSSSSAGERQVVQREEVRPNNMGRNVSEHPMFVPGNELRNMVQNQSSRGLTSSSLPIPGNVASTSRVGSISGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFSSATNESGGRINNYSQRSGSTLAQDMVLSSGSDRRGNHLLQPRSALWMERRGDSGLGLPYSLRTLATSNEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADMYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVGRLKQKKHVNAVESQVEEEPCCVCQEEYVEGDDMGTLECGHNFHTDCIKQWLMQKNLCPICKTTGIASRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 732376 736078 + CmaCh05G001730.1 Cma05g00173 294291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00173 711 MobiDBLite consensus disorder prediction 193 256 - -
Cma05g00173 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Cma05g00173 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Cma05g00173 711 MobiDBLite consensus disorder prediction 1 30 - -
Cma05g00173 711 MobiDBLite consensus disorder prediction 152 173 - -
Cma05g00173 711 MobiDBLite consensus disorder prediction 152 168 - -
Cma05g00173 711 Pfam Ring finger domain 662 703 IPR001841 -
Cma05g00173 711 MobiDBLite consensus disorder prediction 221 239 - -
Cma05g00173 711 SUPERFAMILY RING/U-box 656 705 - -
Cma05g00173 711 CDD RING-H2_TTC3 661 703 - -
Cma05g00173 711 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Cma05g00173 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Cma05g00173 711 MobiDBLite consensus disorder prediction 379 395 - -
Cma05g00173 711 MobiDBLite consensus disorder prediction 379 417 - -
Cma05g00173 711 SMART ring_2 662 702 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00173 - - - csv:101203243 1211.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00173 Cma-Chr5:732376 Cma12g00293 Cma-Chr12:1504259 5.68E-38 dispersed
Cma18g00052 Cma-Chr18:217902 Cma05g00173 Cma-Chr5:732376 6.35E-30 dispersed
Cma12g00560 Cma-Chr12:2921491 Cma05g00173 Cma-Chr5:732376 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00173 Cma_Chr05 FPKM 36.214565 38.980888 33.39238 32.495434 27.666866 29.291592 27.314602 34.170292 35.001148 34.488625