Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00175 ATGGCCTTTGTAACCATGATTCTTCATTTTACAAGTTCTACTCCTATTTGCCAGATCTCTCCATCTTTCTCTCCCCCTGTCAACCCCACTGAATGGGTCGAATGTGCAGTTCAATTTTTTGTCTTCATTTTTTCAGTTTACTGCATCCTTGCTTTTGCCACTGAACTAATTGTCCTTCTTATTCTGTGGCTGTCTCCCCTAGATAAACTAGTCTACGGGTTTGTAGAACAAGGGGGAGGTGTAGAGGGAGGAAAAGGAAGGTGGAAAATGTCTAGTTATGCCTTCTTGAATGACCAGCTCTCCAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTCGTTTTGGGAATTGGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCGCTATGGTTCATCTCCAGGCGCAACAGTTCCAATAAATCTAAGTCCTCTCTAAACCCCACTATCCCGAATGTGTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAATCCAGCTCATTCTGATCCTCCTAAAGTTCAAGTGGCTTCGAACCCTGAGCCCTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCACACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCTTATCCGGAGAGAGTCGGCGGTTCATCCCACGGTAGCGGAGAGGTTCGGTCCGGTGACCAGGCGCCGGTGGTTGTGCCGGAGGTTTCCCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTGCTGGTTTTTCGGATGAAAATGTAATCGGTGAGGGCGGATATGGTATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTGGTTGCTATAAAAAATTTGCTCAATAACAGGGGACAGGCCGAGAGAGAGTTTAAGGTTGAAGTTGAAGCAATTGGACGCGTACGGCACAAGAATCTGGTGCGTTTGCTCGGCTATTGTGCAGAAGGAGCTCACAGGATGCTTGTTTATGAGTACGTCGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGTCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCATGAGGGGCTTGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGATAAGCAGTGGAATACAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACGACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCGAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTCATTATGGAGATAATTACAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAACGCAGAGGGAGTTCTGGATCCCAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGCTAGTAGCTTTACGATGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTCATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGGGTGGGACGGGAAGGGGGACGATCAGTACTGAAGGAAAGGCTGATGGAAAGGCTTGTGAGTGAATCCGGAGAGAGCAGCGGATATGAAAGTGGAGCAACACAAGCAAGCCGTCATCTATGGAGAAAGCAAGAACTGGAAGAACAACAGCAACCTCGCGAACCTCGCACTTTAAGGTGA 1839 47.09 MAFVTMILHFTSSTPICQISPSFSPPVNPTEWVECAVQFFVFIFSVYCILAFATELIVLLILWLSPLDKLVYGFVEQGGGVEGGKGRWKMSSYAFLNDQLSKRTSIFGLRLWVVLGIGVGAAIVIVLFLISLWFISRRNSSNKSKSSLNPTIPNVSKEIQEIRIDHSRNPAHSDPPKVQVASNPEPLPEAEPLATLLQTEEGSTPSGRHRIHIEIGKDHRISYPERVGGSSHGSGEVRSGDQAPVVVPEVSHLGWGHWYTLRELEYSTAGFSDENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNTKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIITGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREGGRSVLKERLMERLVSESGESSGYESGATQASRHLWRKQELEEQQQPREPRTLR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 740818 743380 + CmaCh05G001750.1 Cma05g00175 294293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00175 612 PANTHER OS01G0323000 PROTEIN 94 587 - -
Cma05g00175 612 MobiDBLite consensus disorder prediction 577 591 - -
Cma05g00175 612 MobiDBLite consensus disorder prediction 593 612 - -
Cma05g00175 612 Pfam Protein kinase domain 272 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00175 612 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Cma05g00175 612 SUPERFAMILY Protein kinase-like (PK-like) 252 543 IPR011009 -
Cma05g00175 612 ProSiteProfiles Protein kinase domain profile. 271 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00175 612 MobiDBLite consensus disorder prediction 572 612 - -
Cma05g00175 612 Gene3D Phosphorylase Kinase; domain 1 249 346 - -
Cma05g00175 612 CDD STKc_IRAK 277 543 - -
Cma05g00175 612 Gene3D Transferase(Phosphotransferase) domain 1 347 553 - -
Cma05g00175 612 SMART serkin_6 271 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00175 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Cma05g00175 612 MobiDBLite consensus disorder prediction 166 185 - -
Cma05g00175 612 PANTHER RECEPTOR-LIKE KINASE PLANT 94 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00175 Cma-Chr5:740818 Cma06g01080 Cma-Chr6:7267301 0 dispersed
Cma12g00558 Cma-Chr12:2910366 Cma05g00175 Cma-Chr5:740818 3.29E-77 wgd
Cma03g00971 Cma-Chr3:6874473 Cma05g00175 Cma-Chr5:740818 0 wgd
Cma05g00175 Cma-Chr5:740818 Cma07g00696 Cma-Chr7:3064864 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68568 PF00069 Pkinase 9.90E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00175 - - cmax:111491911 1129.39