Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00179 ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTATTTTGAATTTACTAAACTGCCAGCTTCGCCTTTTTCTTTTGGGAGTTCCAATATTGGTGCCACTTCAATCCGCTTTCAAAACCCAACTCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAATAACGCCACTCACCCTCTTGCGCCACCGTGTCTTCCACCCCATTCCTCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATACAGGATAGCGGCGATGCAGCCGATCCAGATAGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCTGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAACCAAGTCCAATGCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCCGCCTTTGGCTTTCCGGCGGCGATGTCGGCCGGTGGAAGCAACTACAAGCAATTCCACTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA 657 49.62 MDVLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPTPILPSYALSSTASMNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQIAANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHVEDA 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 758601 759695 + CmaCh05G001790.1 Cma05g00179 294297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00179 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 207 IPR045843 GO:0003700|GO:0006355
Cma05g00179 218 MobiDBLite consensus disorder prediction 60 86 - -
Cma05g00179 218 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 37 207 - -
Cma05g00179 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 179 IPR036638 GO:0046983
Cma05g00179 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Cma05g00179 218 SMART finulus 127 176 IPR011598 GO:0046983
Cma05g00179 218 Pfam Helix-loop-helix DNA-binding domain 131 170 IPR011598 GO:0046983
Cma05g00179 218 Gene3D - 120 187 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00179 Cma09g00235 CCT
Cma05g00179 Cma09g00235 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00577 Cma-Chr2:3330367 Cma05g00179 Cma-Chr5:758601 2.53E-46 dispersed
Cma03g01089 Cma-Chr3:7466835 Cma05g00179 Cma-Chr5:758601 7.74E-39 dispersed
Cma05g00179 Cma-Chr5:758601 Cma07g00796 Cma-Chr7:3617126 6.34E-48 dispersed
Cma05g00179 Cma-Chr5:758601 Cma09g00235 Cma-Chr9:1010148 7.77E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35026 PF00010 HLH 1.60E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00179 - - cmos:111462825 362.844