Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00180 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGGAACGGCGGTGGAGATGGAAGACCTCCGGCCAACTATCCGTTAGCACGACAATCATCGATCTACTCCCTCACCTTCGATGAGTTTCAGAACATGGGGAGCATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACTATGACATCTTCTGCTGCTGCTGCTGTTGGTAAAGAAGGGGCTGGTACTGTTGGCGGTAGTAGTGGGTATTTGCAGAGACAGGGATCTTTGACGCTGCCAAGGACACTCAGCCAGAGGAAGGTGGATGAAGTTTGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGGAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAAGATACTCAAGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAACAACACTGGTTTTGGAATTGCTTTCCAGCGGCAAGCTAAAGTTCCTGAGAATAATAATCAGATTCCGGTTCAACCGTCAAACTTATCGTTAAATGTCAATGGAGTTCGAGCACATCCGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGTTGAGCACAAATTTGATGCACGGGTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATTTAACAGCTGGTCCGTTACCTATTGCAACAGAATCTCCAGTGAACCAACTATCATCAGATGGGATTGGAAAGAGCAACGGTGATACCTCGTCCGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTCGAAAAAGTTGTCGAGAGGAGACAACGGAGAATGATAAAAAACAGAGAGTCTGCTGCGAGATCACGGGCTCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTGAAAGAGGATAACCAAGAACTCCGGAGAAAACAGGCAGAAATCATGGAAATGCAGAAATCCCGGGCGTTGGAAGTAATGGACAATCAACAAGGAATCAAGAAGCAATGCTTAAGACGAACGCAGACTGGCCCATGGTTCAATTCATTGGCATGTCAATGGCAACTAGTGCCGTCTGATTTCCTCTGTAATCTTTACATCCTGATGTTTTTAGTTTTGACTTCTGCTTCAGTTGAAAGTAGAGTGAGGAAGACGCCGGAGATGGGGTTTCAGGACCAAACGCCGTCGTCGAGATCAGGCTTCAGAGCTCGCGATTCCAGCCCCGATTCTGTCATTTACGCTCTCGAATCGAGTTTCAGTCTCTTCTCTTCTGCCTCCGCCAGTGTGGAGCGCTGCTCGTTTGCATCGGAGGCCCACGACCGCGATTCCCTCATCTCTGAAATCTCACTTCATTTGGAAGAGCATGATGAGGAAGACCACGAGAGTTGCGGTGGTCCAAATCCAGATCCAAACAAACTAGCACTAAACAACAAGCACAGTCGTCTCTATACCAAGGGAGAAAAAGCGAAAGCAATTCAGAACGAAAATAGCAATGTCGATTTAGAAGACGAGAATCGAGCTGTCGATTCGGCGAGGAGTTCCTTTTCTCTTGCTCTGAAAGAGTGTCAAGATCATAGATCCAGATCTGAAGTTCAATCCAGGAAGCTGGACAGAAGGAGACCTGCTTCATTGGATCTAAATAACGCCACTACAGCTTCCTCACCTCGTTTGGCAAGTATCAAGAAGAACCCTAAAGTATCAACACGGAAGACTGGAACATTTCCAAGCCCTGTTACGCCTAATTATAGGCACAATAGCTTTGGTATGCAAAAGGGGTGGAGCTCGGAGCGAGTGCCATTGCACAACAATGGCGGTCGGAAACATACTAATAACCCTGCATTGCTGACTCTCAACAGTGGCAGAACATTGCCATCGAAGTGGGAAGATGCTGAAAGGTGGATCTTTAGTCCCATATCCGGTGATGGGGTCGTGAGGAATTCAGTTCCACTTCCTCAACGGCGGCCTAAATCAAAGAGTGGGCCACTTGGCCCGCCTGGTATTGCATACTATTCACTATATTCGCCGGCTGTTCCGGCTTATGAAGGAGGGACTTTTGGAAATTTCATTACAGGGTCACCATTTTCAGCTGGAGTGATATCAACGAATGGCTTGGGGATTCATTCCGGTGGGCATGAAGGGACCTTTCATGGACAAACAGAGCCCTCCATGGCACGCTCGCTTAGCGTTCATGGGTGCTCTGAAATGCTGGGTCTTTTGTCCTCAACAACAGGCTTGCAAGAAGGATCAGGGGAAAATGTAAGTACGGAGGTCAAGGGTTCAGGGACGGATGCTTCTCGTGTTGTTTCAAGAAGGGATATGGCCACACAAATGAGCCCAGAGAGCAGTGTGCAATCATCTCCCAAGACGAGGCCGTCAATCTCTGCCTCCAGTTCATCTGGTATGCATATGTTAGAGGTGGGAGCTGTGAGCTCTAAGTTGGAGGTGAGGGATGTACAAGTTGATAACCAGGTTACTTTGACAAGGTGGTCTAAGAAACAAAAAGCGCCATTTCCTTGGAAAGACTCTGTTGACGACAGGAGGAAGAAAGACGGTGATGCGGTTTCTGGATGTTCAGATTTAGATGTCCCTAACATAGCAAAATGTATTTCAAAGGTTAAGCGTGAGGAAGCCAAAATAAGCGCATGGGAAAATCTACAGAAAGCAAAAGCCGATGCAGCCATACGAAAACTAGAGATGAAACTGGAGAAGAAGAGAGCGTCATCAATGGATAAGATCATGAATAAACTGAAATTTGCACAGAAGAAGGCCCAAGAAATGAGGAGCTCAGTGATGGAAAACCAGTCCCCCCGAGACAACAGGACATCTTCTTCCATCAAGTCTCTATCATCTTTTTATCGAACCCGTCATATGGGCTCCCTAAGTGGTTGTTTCACCTGCCATGCCTTTTAG 3108 47.04 MNFKDFGNDPSAGNGGGDGRPPANYPLARQSSIYSLTFDEFQNMGSIGKDFGSMNMDELLKNIWSAEEMQTMTSSAAAAVGKEGAGTVGGSSGYLQRQGSLTLPRTLSQRKVDEVWKDIINEHASAKDGNTVASNLEQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQAKVPENNNQIPVQPSNLSLNVNGVRAHPPQPIFPKQPTVTYGSQLALPSDGQLASPGIRGGIMGIADQGLSTNLMHGSALQGGRMGVVNLTAGPLPIATESPVNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEDNQELRRKQAEIMEMQKSRALEVMDNQQGIKKQCLRRTQTGPWFNSLACQWQLVPSDFLCNLYILMFLVLTSASVESRVRKTPEMGFQDQTPSSRSGFRARDSSPDSVIYALESSFSLFSSASASVERCSFASEAHDRDSLISEISLHLEEHDEEDHESCGGPNPDPNKLALNNKHSRLYTKGEKAKAIQNENSNVDLEDENRAVDSARSSFSLALKECQDHRSRSEVQSRKLDRRRPASLDLNNATTASSPRLASIKKNPKVSTRKTGTFPSPVTPNYRHNSFGMQKGWSSERVPLHNNGGRKHTNNPALLTLNSGRTLPSKWEDAERWIFSPISGDGVVRNSVPLPQRRPKSKSGPLGPPGIAYYSLYSPAVPAYEGGTFGNFITGSPFSAGVISTNGLGIHSGGHEGTFHGQTEPSMARSLSVHGCSEMLGLLSSTTGLQEGSGENVSTEVKGSGTDASRVVSRRDMATQMSPESSVQSSPKTRPSISASSSSGMHMLEVGAVSSKLEVRDVQVDNQVTLTRWSKKQKAPFPWKDSVDDRRKKDGDAVSGCSDLDVPNIAKCISKVKREEAKISAWENLQKAKADAAIRKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVMENQSPRDNRTSSSIKSLSSFYRTRHMGSLSGCFTCHAF 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 760821 770603 - CmaCh05G001800.1 Cma05g00180 294298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00180 1035 MobiDBLite consensus disorder prediction 521 541 - -
Cma05g00180 1035 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 332 383 IPR004827 GO:0003700|GO:0006355
Cma05g00180 1035 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 337 352 IPR004827 GO:0003700|GO:0006355
Cma05g00180 1035 Coils Coil 975 995 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 300 322 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 990 1011 - -
Cma05g00180 1035 CDD bZIP_plant_BZIP46 334 387 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 586 608 - -
Cma05g00180 1035 Pfam bZIP transcription factor 334 386 IPR004827 GO:0003700|GO:0006355
Cma05g00180 1035 Pfam Remorin, C-terminal region 930 1015 IPR005516 -
Cma05g00180 1035 PANTHER REMORIN FAMILY PROTEIN 532 1033 - -
Cma05g00180 1035 Gene3D - 332 388 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 610 649 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 1 26 - -
Cma05g00180 1035 Coils Coil 357 387 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 808 867 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 992 1011 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 586 649 - -
Cma05g00180 1035 SUPERFAMILY Leucine zipper domain 334 382 IPR046347 GO:0003700|GO:0006355
Cma05g00180 1035 Coils Coil 953 973 - -
Cma05g00180 1035 PANTHER OS02G0116800 PROTEIN 532 1033 - -
Cma05g00180 1035 MobiDBLite consensus disorder prediction 808 828 - -
Cma05g00180 1035 SMART brlzneu 330 394 IPR004827 GO:0003700|GO:0006355
Cma05g00180 1035 MobiDBLite consensus disorder prediction 835 867 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00180 Cma-Chr5:760821 Cma06g00469 Cma-Chr6:2223336 1.05E-50 dispersed
Cma20g00167 Cma-Chr20:809092 Cma05g00180 Cma-Chr5:760821 3.55E-16 dispersed
Cma16g01250 Cma-Chr16:9455393 Cma05g00180 Cma-Chr5:760821 6.43E-18 transposed
Cma11g01743 Cma-Chr11:11569204 Cma05g00180 Cma-Chr5:760821 9.20E-112 wgd
Cma12g00556 Cma-Chr12:2893482 Cma05g00180 Cma-Chr5:760821 0 wgd
Cma19g00600 Cma-Chr19:6585446 Cma05g00180 Cma-Chr5:760821 1.93E-113 wgd
Cma03g00977 Cma-Chr3:6913953 Cma05g00180 Cma-Chr5:760821 4.86E-44 wgd
Cma05g00180 Cma-Chr5:760821 Cma07g00704 Cma-Chr7:3088404 2.74E-77 wgd
Cma05g00180 Cma-Chr5:760821 Cma09g00233 Cma-Chr9:995679 1.65E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35027 PF03763 Remorin_C 2.70E-23 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00180 - - cmax:111491992 1122.07