Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00180 | ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGGAACGGCGGTGGAGATGGAAGACCTCCGGCCAACTATCCGTTAGCACGACAATCATCGATCTACTCCCTCACCTTCGATGAGTTTCAGAACATGGGGAGCATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACTATGACATCTTCTGCTGCTGCTGCTGTTGGTAAAGAAGGGGCTGGTACTGTTGGCGGTAGTAGTGGGTATTTGCAGAGACAGGGATCTTTGACGCTGCCAAGGACACTCAGCCAGAGGAAGGTGGATGAAGTTTGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGGAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAAGATACTCAAGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAACAACACTGGTTTTGGAATTGCTTTCCAGCGGCAAGCTAAAGTTCCTGAGAATAATAATCAGATTCCGGTTCAACCGTCAAACTTATCGTTAAATGTCAATGGAGTTCGAGCACATCCGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGTTGAGCACAAATTTGATGCACGGGTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATTTAACAGCTGGTCCGTTACCTATTGCAACAGAATCTCCAGTGAACCAACTATCATCAGATGGGATTGGAAAGAGCAACGGTGATACCTCGTCCGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTCGAAAAAGTTGTCGAGAGGAGACAACGGAGAATGATAAAAAACAGAGAGTCTGCTGCGAGATCACGGGCTCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTGAAAGAGGATAACCAAGAACTCCGGAGAAAACAGGCAGAAATCATGGAAATGCAGAAATCCCGGGCGTTGGAAGTAATGGACAATCAACAAGGAATCAAGAAGCAATGCTTAAGACGAACGCAGACTGGCCCATGGTTCAATTCATTGGCATGTCAATGGCAACTAGTGCCGTCTGATTTCCTCTGTAATCTTTACATCCTGATGTTTTTAGTTTTGACTTCTGCTTCAGTTGAAAGTAGAGTGAGGAAGACGCCGGAGATGGGGTTTCAGGACCAAACGCCGTCGTCGAGATCAGGCTTCAGAGCTCGCGATTCCAGCCCCGATTCTGTCATTTACGCTCTCGAATCGAGTTTCAGTCTCTTCTCTTCTGCCTCCGCCAGTGTGGAGCGCTGCTCGTTTGCATCGGAGGCCCACGACCGCGATTCCCTCATCTCTGAAATCTCACTTCATTTGGAAGAGCATGATGAGGAAGACCACGAGAGTTGCGGTGGTCCAAATCCAGATCCAAACAAACTAGCACTAAACAACAAGCACAGTCGTCTCTATACCAAGGGAGAAAAAGCGAAAGCAATTCAGAACGAAAATAGCAATGTCGATTTAGAAGACGAGAATCGAGCTGTCGATTCGGCGAGGAGTTCCTTTTCTCTTGCTCTGAAAGAGTGTCAAGATCATAGATCCAGATCTGAAGTTCAATCCAGGAAGCTGGACAGAAGGAGACCTGCTTCATTGGATCTAAATAACGCCACTACAGCTTCCTCACCTCGTTTGGCAAGTATCAAGAAGAACCCTAAAGTATCAACACGGAAGACTGGAACATTTCCAAGCCCTGTTACGCCTAATTATAGGCACAATAGCTTTGGTATGCAAAAGGGGTGGAGCTCGGAGCGAGTGCCATTGCACAACAATGGCGGTCGGAAACATACTAATAACCCTGCATTGCTGACTCTCAACAGTGGCAGAACATTGCCATCGAAGTGGGAAGATGCTGAAAGGTGGATCTTTAGTCCCATATCCGGTGATGGGGTCGTGAGGAATTCAGTTCCACTTCCTCAACGGCGGCCTAAATCAAAGAGTGGGCCACTTGGCCCGCCTGGTATTGCATACTATTCACTATATTCGCCGGCTGTTCCGGCTTATGAAGGAGGGACTTTTGGAAATTTCATTACAGGGTCACCATTTTCAGCTGGAGTGATATCAACGAATGGCTTGGGGATTCATTCCGGTGGGCATGAAGGGACCTTTCATGGACAAACAGAGCCCTCCATGGCACGCTCGCTTAGCGTTCATGGGTGCTCTGAAATGCTGGGTCTTTTGTCCTCAACAACAGGCTTGCAAGAAGGATCAGGGGAAAATGTAAGTACGGAGGTCAAGGGTTCAGGGACGGATGCTTCTCGTGTTGTTTCAAGAAGGGATATGGCCACACAAATGAGCCCAGAGAGCAGTGTGCAATCATCTCCCAAGACGAGGCCGTCAATCTCTGCCTCCAGTTCATCTGGTATGCATATGTTAGAGGTGGGAGCTGTGAGCTCTAAGTTGGAGGTGAGGGATGTACAAGTTGATAACCAGGTTACTTTGACAAGGTGGTCTAAGAAACAAAAAGCGCCATTTCCTTGGAAAGACTCTGTTGACGACAGGAGGAAGAAAGACGGTGATGCGGTTTCTGGATGTTCAGATTTAGATGTCCCTAACATAGCAAAATGTATTTCAAAGGTTAAGCGTGAGGAAGCCAAAATAAGCGCATGGGAAAATCTACAGAAAGCAAAAGCCGATGCAGCCATACGAAAACTAGAGATGAAACTGGAGAAGAAGAGAGCGTCATCAATGGATAAGATCATGAATAAACTGAAATTTGCACAGAAGAAGGCCCAAGAAATGAGGAGCTCAGTGATGGAAAACCAGTCCCCCCGAGACAACAGGACATCTTCTTCCATCAAGTCTCTATCATCTTTTTATCGAACCCGTCATATGGGCTCCCTAAGTGGTTGTTTCACCTGCCATGCCTTTTAG | 3108 | 47.04 | MNFKDFGNDPSAGNGGGDGRPPANYPLARQSSIYSLTFDEFQNMGSIGKDFGSMNMDELLKNIWSAEEMQTMTSSAAAAVGKEGAGTVGGSSGYLQRQGSLTLPRTLSQRKVDEVWKDIINEHASAKDGNTVASNLEQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQAKVPENNNQIPVQPSNLSLNVNGVRAHPPQPIFPKQPTVTYGSQLALPSDGQLASPGIRGGIMGIADQGLSTNLMHGSALQGGRMGVVNLTAGPLPIATESPVNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEDNQELRRKQAEIMEMQKSRALEVMDNQQGIKKQCLRRTQTGPWFNSLACQWQLVPSDFLCNLYILMFLVLTSASVESRVRKTPEMGFQDQTPSSRSGFRARDSSPDSVIYALESSFSLFSSASASVERCSFASEAHDRDSLISEISLHLEEHDEEDHESCGGPNPDPNKLALNNKHSRLYTKGEKAKAIQNENSNVDLEDENRAVDSARSSFSLALKECQDHRSRSEVQSRKLDRRRPASLDLNNATTASSPRLASIKKNPKVSTRKTGTFPSPVTPNYRHNSFGMQKGWSSERVPLHNNGGRKHTNNPALLTLNSGRTLPSKWEDAERWIFSPISGDGVVRNSVPLPQRRPKSKSGPLGPPGIAYYSLYSPAVPAYEGGTFGNFITGSPFSAGVISTNGLGIHSGGHEGTFHGQTEPSMARSLSVHGCSEMLGLLSSTTGLQEGSGENVSTEVKGSGTDASRVVSRRDMATQMSPESSVQSSPKTRPSISASSSSGMHMLEVGAVSSKLEVRDVQVDNQVTLTRWSKKQKAPFPWKDSVDDRRKKDGDAVSGCSDLDVPNIAKCISKVKREEAKISAWENLQKAKADAAIRKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVMENQSPRDNRTSSSIKSLSSFYRTRHMGSLSGCFTCHAF | 1035 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 760821 | 770603 | - | CmaCh05G001800.1 | Cma05g00180 | 294298 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 521 | 541 | - | - | |
Cma05g00180 | 1035 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 332 | 383 | IPR004827 | GO:0003700|GO:0006355 | |
Cma05g00180 | 1035 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 337 | 352 | IPR004827 | GO:0003700|GO:0006355 | |
Cma05g00180 | 1035 | Coils | Coil | 975 | 995 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 300 | 322 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 990 | 1011 | - | - | |
Cma05g00180 | 1035 | CDD | bZIP_plant_BZIP46 | 334 | 387 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 586 | 608 | - | - | |
Cma05g00180 | 1035 | Pfam | bZIP transcription factor | 334 | 386 | IPR004827 | GO:0003700|GO:0006355 | |
Cma05g00180 | 1035 | Pfam | Remorin, C-terminal region | 930 | 1015 | IPR005516 | - | |
Cma05g00180 | 1035 | PANTHER | REMORIN FAMILY PROTEIN | 532 | 1033 | - | - | |
Cma05g00180 | 1035 | Gene3D | - | 332 | 388 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 610 | 649 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cma05g00180 | 1035 | Coils | Coil | 357 | 387 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 808 | 867 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 992 | 1011 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 586 | 649 | - | - | |
Cma05g00180 | 1035 | SUPERFAMILY | Leucine zipper domain | 334 | 382 | IPR046347 | GO:0003700|GO:0006355 | |
Cma05g00180 | 1035 | Coils | Coil | 953 | 973 | - | - | |
Cma05g00180 | 1035 | PANTHER | OS02G0116800 PROTEIN | 532 | 1033 | - | - | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 808 | 828 | - | - | |
Cma05g00180 | 1035 | SMART | brlzneu | 330 | 394 | IPR004827 | GO:0003700|GO:0006355 | |
Cma05g00180 | 1035 | MobiDBLite | consensus disorder prediction | 835 | 867 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00180 | Cma-Chr5:760821 | Cma06g00469 | Cma-Chr6:2223336 | 1.05E-50 | dispersed | |
Cma20g00167 | Cma-Chr20:809092 | Cma05g00180 | Cma-Chr5:760821 | 3.55E-16 | dispersed | |
Cma16g01250 | Cma-Chr16:9455393 | Cma05g00180 | Cma-Chr5:760821 | 6.43E-18 | transposed | |
Cma11g01743 | Cma-Chr11:11569204 | Cma05g00180 | Cma-Chr5:760821 | 9.20E-112 | wgd | |
Cma12g00556 | Cma-Chr12:2893482 | Cma05g00180 | Cma-Chr5:760821 | 0 | wgd | |
Cma19g00600 | Cma-Chr19:6585446 | Cma05g00180 | Cma-Chr5:760821 | 1.93E-113 | wgd | |
Cma03g00977 | Cma-Chr3:6913953 | Cma05g00180 | Cma-Chr5:760821 | 4.86E-44 | wgd | |
Cma05g00180 | Cma-Chr5:760821 | Cma07g00704 | Cma-Chr7:3088404 | 2.74E-77 | wgd | |
Cma05g00180 | Cma-Chr5:760821 | Cma09g00233 | Cma-Chr9:995679 | 1.65E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35027 | PF03763 | Remorin_C | 2.70E-23 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00180 | - | - | cmax:111491992 | 1122.07 |